4V9P Control of ribosomal subunit rotation by elongation factor G date
authors Pulk, A., Cate, J.H.D.
compound source
symmetry
R_factor
R_Free 0.2671
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
note 4V9P supersedes 4KJ5, 4KJ6, 4KJ7, 4KJ8, 4KJ9, 4KJA, 4KJB, 4KJC
Gene
Ontology
ChainFunctionProcessComponent
A5, E5


AC, GC, CC, EC


AH, EH, CH, GH


AM, CM, GM, EM


AO, GO, EO, CO


AR, GR, CR, ER


AT, CT, ET, GT


AY, EY, CY, GY


AZ, CZ, GZ, EZ


BC, FC, DC, HC


BE, FE, DE, HE


BF, DF, FF, HF


BN, HN, DN, FN


C1, A1, G1, E1


CD, AD, ED, GD


CF, EF, AF, GF


CI, GI, EI, AI


CK, EK, GK, AK


CQ, EQ, AQ, GQ
  • translation repressor activi...


  • CW, EW, AW, GW


    DD, HD, FD, BD


    DG, HG, FG, BG


    DI, FI, BI, HI


    DJ, BJ, HJ, FJ


    DM, FM, BM, HM


    DP, BP, FP, HP
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


  • E0, C0, G0, A0


    E3, A3, G3, C3


    E4, A4, G4, C4


    EE, AE, GE, CE


    EG, GG, CG, AG


    EN, GN, AN, CN


    EP, GP, CP, AP


    FH, BH, HH, DH


    FK, DK, HK, BK


    FO, DO, BO, HO
  • mRNA binding involved in pos...


  • FR, BR, HR, DR


    FT, BT, HT, DT
  • ornithine decarboxylase inhi...


  • FV, DV, HV, BV


    G2, C2, E2, A2


    GJ, AJ, EJ, CJ


    GL, EL, AL, CL


    GS, CS, ES, AS


    GU, EU, AU, CU


    GV, CV, EV, AV


    GX, AX, CX, EX


    HB, DB, BB, FB


    HL, BL, DL, FL


    HQ, FQ, BQ, DQ


    HS, DS, BS, FS


    HU, DU, FU, BU


    Primary referenceControl of ribosomal subunit rotation by elongation factor G., Pulk A, Cate JH, Science. 2013 Jun 28;340(6140):1235970. doi: 10.1126/science.1235970. PMID:23812721
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1803 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V9P
  • Structure Factors (56094 Kb)
  • Retrieve 4V9P in mmCIF format [Save to disk]
  • View 4V9P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V9P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v9p_CX] [4v9p_AR] [4v9p_CR] [4v9p_CA] [4v9p_FL] [4v9p_E2] [4v9p_BH] [4v9p_FF] [4v9p_CB] [4v9p_GB] [4v9p_FS] [4v9p_EP] [4v9p_HT] [4v9p_BR] [4v9p_EK] [4v9p_BL] [4v9p_FA] [4v9p_BM] [4v9p_DE] [4v9p_CT] [4v9p_HS] [4v9p_EX] [4v9p_GK] [4v9p_EW] [4v9p_GZ] [4v9p_AD] [4v9p_AY] [4v9p_CQ] [4v9p_BT] [4v9p_CD] [4v9p_G2] [4v9p_BV] [4v9p_DN] [4v9p_DL] [4v9p_BF] [4v9p_FH] [4v9p_DP] [4v9p_GG] [4v9p_CJ] [4v9p_FD] [4v9p_GS] [4v9p_C2] [4v9p_BD] [4v9p_GO] [4v9p_AK] [4v9p_DO] [4v9p_A5] [4v9p_HU] [4v9p_C3] [4v9p_CY] [4v9p_BW] [4v9p_AH] [4v9p_AA] [4v9p_AC] [4v9p_EJ] [4v9p_E5] [4v9p_FU] [4v9p_A4] [4v9p_FM] [4v9p_EF] [4v9p_GI] [4v9p_BE] [4v9p_AG] [4v9p_HF] [4v9p_GU] [4v9p_GW] [4v9p_FN] [4v9p_BO] [4v9p_CC] [4v9p_BG] [4v9p_BN] [4v9p_DJ] [4v9p_HE] [4v9p_GL] [4v9p_HV] [4v9p_GN] [4v9p_GD] [4v9p_DI] [4v9p_EE] [4v9p_FT] [4v9p_GQ] [4v9p_CE] [4v9p_C0] [4v9p_GR] [4v9p_GA] [4v9p_HC] [4v9p_AX] [4v9p_BP] [4v9p_AL] [4v9p_FC] [4v9p_GM] [4v9p_AZ] [4v9p_DF] [4v9p_FG] [4v9p_C1] [4v9p_A1] [4v9p_HG] [4v9p_AO] [4v9p_EI] [4v9p_GT] [4v9p_HI] [4v9p_FE] [4v9p_FK] [4v9p_G0] [4v9p_CU] [4v9p_GJ] [4v9p_HQ] [4v9p_EU] [4v9p_AM] [4v9p_EL] [4v9p_AT] [4v9p_A2] [4v9p_FQ] [4v9p_EO] [4v9p_AQ] [4v9p] [4v9p_EN] [4v9p_AJ] [4v9p_CN] [4v9p_HA] [4v9p_CV] [4v9p_EY] [4v9p_A0] [4v9p_C4] [4v9p_AI] [4v9p_HO] [4v9p_CO] [4v9p_DG] [4v9p_AE] [4v9p_CW] [4v9p_BS] [4v9p_BI] [4v9p_DU] [4v9p_AW] [4v9p_BA] [4v9p_DB] [4v9p_BU] [4v9p_DD] [4v9p_BQ] [4v9p_CP] [4v9p_FO] [4v9p_CI] [4v9p_AN] [4v9p_CL] [4v9p_AS] [4v9p_GP] [4v9p_BK] [4v9p_A3] [4v9p_EV] [4v9p_HK] [4v9p_AU] [4v9p_E0] [4v9p_GF] [4v9p_CZ] [4v9p_FI] [4v9p_FJ] [4v9p_AF] [4v9p_EC] [4v9p_E1] [4v9p_EG] [4v9p_BB] [4v9p_FR] [4v9p_DS] [4v9p_AP] [4v9p_CG] [4v9p_CM] [4v9p_EH] [4v9p_G3] [4v9p_CF] [4v9p_GE] [4v9p_DW] [4v9p_FP] [4v9p_ES] [4v9p_EZ] [4v9p_G4] [4v9p_FW] [4v9p_DA] [4v9p_GH] [4v9p_DT] [4v9p_EA] [4v9p_E3] [4v9p_ED] [4v9p_ET] [4v9p_HN] [4v9p_DC] [4v9p_E4] [4v9p_AB] [4v9p_DR] [4v9p_DV] [4v9p_GX] [4v9p_DK] [4v9p_EM] [4v9p_HJ] [4v9p_AV] [4v9p_BJ] [4v9p_DQ] [4v9p_ER] [4v9p_CH] [4v9p_GC] [4v9p_HH] [4v9p_HD] [4v9p_HP] [4v9p_FV] [4v9p_CS] [4v9p_HR] [4v9p_HL] [4v9p_GY] [4v9p_BC] [4v9p_DM] [4v9p_G1] [4v9p_HB] [4v9p_GV] [4v9p_DH] [4v9p_FB] [4v9p_EB] [4v9p_CK] [4v9p_HM] [4v9p_EQ]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V9P: [EFG_C] [EFG_IV] [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V9P
  • Community annotation for 4V9P at PDBWiki (http://pdbwiki.org)

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