2JBL Electron Transport date Dec 08, 2006
title Photosynthetic Reaction Center From Blastochloris Viridis
authors C.R.D.Lancaster
compound source
Molecule: Photosynthetic Reaction Center Cytochrome C Subun
Chain: C
Synonym: Subunit C, Cytochrome C558c559
Organism_scientific: Blastochloris Viridis
Organism_common: Rhodopseudomonas Viridis
Organism_taxid: 1079
Other_details: German Collection Of Microorganisms (Dsm 133

Molecule: Reaction Center Protein H Chain
Chain: H
Synonym: Subunit H, Photosynthetic Reaction Center H Subuni

Organism_scientific: Blastochloris Viridis
Organism_common: Rhodopseudomonas Viridis
Organism_taxid: 1079
Other_details: German Collection Of Microorganisms (Dsm 133

Molecule: Reaction Center Protein L Chain
Chain: L
Synonym: Subunit L, Photosynthetic Reaction Center L Subuni

Organism_scientific: Blastochloris Viridis
Organism_common: Rhodopseudomonas Viridis
Organism_taxid: 1079
Other_details: German Collection Of Microorganisms (Dsm 133

Molecule: Reaction Center Protein M Chain
Chain: M
Synonym: Subunit M, Photosynthetic Reaction Center M Subuni

Organism_scientific: Blastochloris Viridis
Organism_common: Rhodopseudomonas Viridis
Organism_taxid: 1079
Other_details: German Collection Of Microorganisms (Dsm 133
symmetry Space Group: P 43 21 2
R_factor 0.190 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
223.500 223.500 113.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand BCB, BPB, FE, FME, HEC, LDA, MQ7, NS5, SMA, SO4 enzyme
note 2JBL (Molecule of the Month:pdb141)supersedes 4PRC
Gene
Ontology
ChainFunctionProcessComponent
C


H
  • electron transporter, transf...


  • L


    M


    Primary referenceA comparison of stigmatellin conformations, free and bound to the photosynthetic reaction center and the cytochrome bc1 complex., Lancaster CR, Hunte C, Kelley J 3rd, Trumpower BL, Ditchfield R, J Mol Biol. 2007 Apr 20;368(1):197-208. Epub 2007 Feb 11. PMID:17337272
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (2jbl.pdb1.gz) 211 Kb
  • LPC: Ligand-Protein Contacts for 2JBL
  • CSU: Contacts of Structural Units for 2JBL
  • Likely Quarternary Molecular Structure file(s) for 2JBL
  • Structure Factors (828 Kb)
  • Retrieve 2JBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JBL from S2C, [Save to disk]
  • Re-refined 2jbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JBL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jbl_H] [2jbl_L] [2jbl] [2jbl_C] [2jbl_M]
  • SWISS-PROT database: [P07173] [P06008] [P06009] [P06010]
  • Domain organization of [CYCR_RHOVI] [RCEH_RHOVI] [RCEL_RHOVI] [RCEM_RHOVI] by SWISSPFAM
  • Other resources with information on 2JBL
  • Community annotation for 2JBL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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