4QYK Crystal structure of a canine parvovirus variant date
authors Lukk, T., Organtini, L.J., Hafenstein, S.U.
compound source
symmetry
R_factor
R_Free 0.2208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
Gene
Ontology
ChainFunctionProcessComponent
S, F, a, T, N, K, d, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, c, b, D, R, I, G, U


Primary referenceGlobal displacement of canine parvovirus by a host-adapted variant: A structural comparison between pandemic viruses with distinct host ranges., Organtini LJ, Allison AB, Lukk T, Parrish CR, Hafenstein S, J Virol. 2014 Nov 19. pii: JVI.02611-14. PMID:25410876
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1921 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4QYK
  • Structure Factors (4525 Kb)
  • Retrieve 4QYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QYK from S2C, [Save to disk]
  • View 4QYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QYK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qyk] [4qyk_A] [4qyk_T] [4qyk_Y] [4qyk_Z] [4qyk_J] [4qyk_d] [4qyk_E] [4qyk_R] [4qyk_M] [4qyk_V] [4qyk_c] [4qyk_F] [4qyk_L] [4qyk_S] [4qyk_U] [4qyk_K] [4qyk_X] [4qyk_I] [4qyk_N] [4qyk_b] [4qyk_B] [4qyk_P] [4qyk_D] [4qyk_Q] [4qyk_H] [4qyk_W] [4qyk_G] [4qyk_a] [4qyk_O] [4qyk_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4QYK
  • Community annotation for 4QYK at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science