4UG0
STRUCTURE OF THE HUMAN 80S RIBOSOME
date
authors
Khatter, H., Myasnikov, A.G., Natchiar, S.K., Klaholz, B.P.
compound
source
symmetry
R_factor
R_Free
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
3.60
Gene
Ontology
Chain
Function
Process
Component
LA
LB
LC
LD
LE
LF
LG
LH
LI
LJ
LL
LM
LN
LO
LP
LQ
LR
LS
LT
LU
LV
LW
LX
LY
LZ
La
Lb
Lc
Ld
Le
Lf
Lg
Lh
Li
Lj
Lk
Ll
Lm
intracellular transport of v...
Ln
Lo
cytosolic large ribosomal su...
Lp
Lr
Lz
SA
virus receptor activity
cytosolic small ribosomal su...
SB
cytosolic small ribosomal su...
SC
cytosolic small ribosomal su...
SD
cytosolic small ribosomal su...
SE
ribosome
cytosolic small ribosomal su...
SF
cytosolic small ribosomal su...
SG
cytosolic small ribosomal su...
SH
cytosolic small ribosomal su...
SI
cytosolic small ribosomal su...
SJ
cytosolic small ribosomal su...
SK
cytosolic small ribosomal su...
SL
cytosolic small ribosomal su...
SM
SN
cytosolic small ribosomal su...
SO
translation regulator activi...
cytosolic small ribosomal su...
SP
cytosolic small ribosomal su...
SQ
cytosolic small ribosomal su...
SR
cytosolic small ribosomal su...
SS
small ribosomal subunit
cytosolic small ribosomal su...
ST
cytosolic small ribosomal su...
SU
cytosolic small ribosomal su...
SV
cytosolic small ribosomal su...
SW
cytosolic small ribosomal su...
SX
cytosolic small ribosomal su...
SY
small ribosomal subunit
cytosolic small ribosomal su...
SZ
small ribosomal subunit
cytosolic small ribosomal su...
Sa
small ribosomal subunit
cytosolic small ribosomal su...
Sb
cytosolic small ribosomal su...
Sc
small ribosomal subunit
cytosolic small ribosomal su...
Sd
small ribosomal subunit
cytosolic small ribosomal su...
Se
small ribosomal subunit
cytosolic small ribosomal su...
Sf
intracellular transport of v...
small ribosomal subunit
cytosolic small ribosomal su...
Sg
protein tyrosine kinase inhi...
Primary reference
Structure of the human 80S ribosome., Khatter H, Myasnikov AG, Natchiar SK, Klaholz BP, Nature. 2015 Apr 30;520(7549):640-5. doi: 10.1038/nature14427. Epub 2015 Apr 22. PMID:
25901680
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(1925 Kb)
[Save to disk]
CSU:
Contacts of Structural Units
for 4UG0
Retrieve 4UG0 in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
4UG0
from
S2C
,
[Save to disk]
View 4UG0 in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 4UG0
Ramachandran
plot from
PDBSum
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[4ug0_LI]
[4ug0_L8]
[4ug0_Se]
[4ug0_Ln]
[4ug0_SU]
[4ug0_LJ]
[4ug0_Ld]
[4ug0_Lo]
[4ug0_LA]
[4ug0_Lf]
[4ug0_Lz]
[4ug0]
[4ug0_Sc]
[4ug0_SN]
[4ug0_SP]
[4ug0_SD]
[4ug0_LD]
[4ug0_SF]
[4ug0_Sa]
[4ug0_LG]
[4ug0_Sg]
[4ug0_L7]
[4ug0_LX]
[4ug0_SK]
[4ug0_LN]
[4ug0_Lb]
[4ug0_SJ]
[4ug0_LU]
[4ug0_SS]
[4ug0_SC]
[4ug0_SQ]
[4ug0_SL]
[4ug0_SH]
[4ug0_Sd]
[4ug0_Lr]
[4ug0_Li]
[4ug0_LP]
[4ug0_SI]
[4ug0_LC]
[4ug0_Lh]
[4ug0_La]
[4ug0_Le]
[4ug0_LO]
[4ug0_SO]
[4ug0_Lp]
[4ug0_LH]
[4ug0_LE]
[4ug0_SX]
[4ug0_SZ]
[4ug0_LW]
[4ug0_SB]
[4ug0_Lg]
[4ug0_LF]
[4ug0_ST]
[4ug0_LL]
[4ug0_SA]
[4ug0_Sb]
[4ug0_Lj]
[4ug0_LB]
[4ug0_SG]
[4ug0_SM]
[4ug0_Lk]
[4ug0_SV]
[4ug0_LZ]
[4ug0_SR]
[4ug0_LT]
[4ug0_Sf]
[4ug0_S2]
[4ug0_LV]
[4ug0_L5]
[4ug0_SY]
[4ug0_Lc]
[4ug0_S6]
[4ug0_Lm]
[4ug0_SE]
[4ug0_LY]
[4ug0_LS]
[4ug0_LM]
[4ug0_SW]
[4ug0_LR]
[4ug0_Ll]
[4ug0_LQ]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domains
found in 4UG0:
[KH]
[KOW]
[Ribosomal_L14]
[Ribosomal_L15e]
[Ribosomal_L19e]
[Ribosomal_L2]
[Ribosomal_L2_C]
[Ribosomal_L31e]
[Ribosomal_L32e]
[Ribosomal_L40e]
[Ribosomal_S10]
[Ribosomal_S13_N]
[Ribosomal_S15]
[Ribosomal_S19e]
[Ribosomal_S27]
[Ribosomal_S3Ae]
[Ribosomal_S4]
[Ribosomal_S6e]
[S4]
[TRASH]
[UBQ]
[WD40 ]
by
SMART
Other resources with information on 4UG0
Community annotation for
4UG0
at
PDBWiki
(http://pdbwiki.org)
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