4U4R	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	date
authors	Loubresse, N.Garreau.de., Prokhorova, I., Yusupova, G., Yusupov, M.
compound		source
symmetry		R_factor R_Free 0.2458
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.80
note	4U4R supersedes 4UJP, 4UJQ, 4UJR, 4UJS, 4UJT
Gene Ontology	Chain Function Process Component C0, c0 C1, c1 cytosolic small ribosomal su... C2, c2 cytosolic small ribosomal su... C5, c5 C7, c7 C8, c8 D1, d1 cytosolic small ribosomal su... D2, d2 cytosolic small ribosomal su... D7, d7 cytosolic small ribosomal su... L2, l2 L5, l5 cytosolic large ribosomal su... L6, l6 L9, l9 M0, m0 cytosolic large ribosomal su... M1, m1 cytosolic large ribosomal su... M3, m3 cytosolic large ribosomal su... M5, m5 M6, m6 cytosolic large ribosomal su... M8, m8 cytosolic large ribosomal su... M9, m9 cytosolic large ribosomal su... N0, n0 cytosolic large ribosomal su... N3, n3 cytosolic large ribosomal su... N5, n5 cytosolic large ribosomal su... N6, n6 O1, o1 O4, o4 preribosome, large subunit p... O7, o7 cytosolic large ribosomal su... O8, o8 cytosolic large ribosomal su... O9, o9 cytosolic large ribosomal su... Q3, q3 cytosolic large ribosomal su... S0, s0 S3, s3 cytosolic small ribosomal su... S4, s4 cytosolic small ribosomal su... S7, s7 S9, s9 cytosolic small ribosomal su... SR, sR GDP-dissociation inhibitor a... c3, C3 cytosolic small ribosomal su... c4, C4 c6, C6 c9, C9 cytosolic small ribosomal su... d0, D0 cytosolic small ribosomal su... d3, D3 d4, D4 d5, D5 cytosolic small ribosomal su... d6, D6 d8, D8 cytosolic small ribosomal su... d9, D9 cytosolic small ribosomal su... e0, E0 e1, E1 l3, L3 cytosolic large ribosomal su... l4, L4 cytosolic large ribosomal su... l7, L7 l8, L8 cytosolic large ribosomal su... m4, M4 cytosolic large ribosomal su... m7, M7 n1, N1 cytosolic large ribosomal su... n2, N2 n4, N4 cytosolic large ribosomal su... n7, N7 cytosolic large ribosomal su... n8, N8 cytosolic large ribosomal su... n9, N9 o0, O0 cytosolic large ribosomal su... o2, O2 cytosolic large ribosomal su... o3, O3 o5, O5 cytosolic large ribosomal su... o6, O6 p0 q0, Q0 q1, Q1 q2, Q2 cytosolic large ribosomal su... s1, S1 s2, S2 s5, S5 cytosolic small ribosomal su... s6, S6 cytosolic small ribosomal su... s8, S8 cytosolic small ribosomal su... sM, SM
Primary reference	Structural basis for the inhibition of the eukaryotic ribosome., Garreau de Loubresse N, Prokhorova I, Holtkamp W, Rodnina MV, Yusupova G, Yusupov M, Nature. 2014 Sep 25;513(7519):517-22. doi: 10.1038/nature13737. Epub 2014 Sep 10. PMID:25209664

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3187 Kb) [Save to disk] CSU: Contacts of Structural Units for 4U4R Structure Factors (33530 Kb) Retrieve 4U4R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4U4R from S2C, [Save to disk]

View 4U4R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4U4R

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4u4r_L6] [4u4r_l4] [4u4r_E0] [4u4r_O1] [4u4r_c6] [4u4r_m6] [4u4r_Q3] [4u4r_D1] [4u4r_C0] [4u4r_s4] [4u4r_8] [4u4r_p2] [4u4r_n9] [4u4r_M4] [4u4r_S5] [4u4r_m8] [4u4r_C2] [4u4r_s5] [4u4r_l2] [4u4r_L9] [4u4r_N8] [4u4r_m7] [4u4r_d9] [4u4r_o6] [4u4r_L7] [4u4r_q2] [4u4r_7] [4u4r_c1] [4u4r_C8] [4u4r_1] [4u4r_O4] [4u4r_o4] [4u4r_N7] [4u4r_N0] [4u4r_N3] [4u4r_L3] [4u4r_4] [4u4r_SM] [4u4r_d3] [4u4r_d7] [4u4r_m4] [4u4r_c2] [4u4r_S7] [4u4r_n8] [4u4r_s8] [4u4r_D3] [4u4r_l3] [4u4r_d0] [4u4r_N1] [4u4r_c7] [4u4r_D6] [4u4r_O2] [4u4r_m0] [4u4r_D2] [4u4r_n3] [4u4r_d6] [4u4r_q3] [4u4r_C6] [4u4r_C3] [4u4r_q1] [4u4r_D4] [4u4r] [4u4r_l5] [4u4r_M8] [4u4r_C7] [4u4r_3] [4u4r_l8] [4u4r_c9] [4u4r_d2] [4u4r_l6] [4u4r_L5] [4u4r_o0] [4u4r_6] [4u4r_M6] [4u4r_M3] [4u4r_S4] [4u4r_M5] [4u4r_n1] [4u4r_q0] [4u4r_o7] [4u4r_M9] [4u4r_O6] [4u4r_o2] [4u4r_n6] [4u4r_n5] [4u4r_5] [4u4r_s3] [4u4r_sR] [4u4r_l7] [4u4r_O9] [4u4r_Q2] [4u4r_N5] [4u4r_N6] [4u4r_m1] [4u4r_s7] [4u4r_d8] [4u4r_m9] [4u4r_L8] [4u4r_o5] [4u4r_n2] [4u4r_o3] [4u4r_N2] [4u4r_c8] [4u4r_d4] [4u4r_D0] [4u4r_c5] [4u4r_M1] [4u4r_S0] [4u4r_s6] [4u4r_S8] [4u4r_sM] [4u4r_2] [4u4r_D9] [4u4r_p0] [4u4r_d1] [4u4r_s1] [4u4r_C1] [4u4r_m3] [4u4r_N9] [4u4r_n7] [4u4r_c3] [4u4r_M7] [4u4r_m2] [4u4r_d5] [4u4r_s2] [4u4r_o1] [4u4r_C4] [4u4r_n0] [4u4r_SR] [4u4r_O8] [4u4r_c4] [4u4r_O5] [4u4r_Q1] [4u4r_C9] [4u4r_S6] [4u4r_D7] [4u4r_S3] [4u4r_o9] [4u4r_E1] [4u4r_c0] [4u4r_M0] [4u4r_L2] [4u4r_e1] [4u4r_e0] [4u4r_S2] [4u4r_O0] [4u4r_s9] [4u4r_D8] [4u4r_O3] [4u4r_C5] [4u4r_L4] [4u4r_s0] [4u4r_Q0] [4u4r_N4] [4u4r_m5] [4u4r_O7] [4u4r_p1] [4u4r_o8] [4u4r_n4] [4u4r_l9] [4u4r_D5] [4u4r_S1] [4u4r_S9] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4U4R: [HABP4_PAI-RBP1] [KH] [KOW] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [WD40 ] by SMART

Other resources with information on 4U4R

Community annotation for 4U4R at PDBWiki (http://pdbwiki.org)

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