4V42 Ribosome date 1-0 20, 1997
authors M.M.Yusupov, G.Z.Yusupova, A.Baucom, K.Lieberman, T.N.Earnes J.H.D.Cate, H.F.Noller
compound source
symmetry Space Group: I 4 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
507.200 507.200 803.660 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V42 supersedes 1GIX, 1GIY
Gene
Ontology
ChainFunctionProcessComponent
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AX


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BJ, BI


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Primary referenceCrystal structure of the ribosome at 5.5 A resolution., Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Earnest TN, Cate JH, Noller HF, Science. 2001 May 4;292(5518):883-96. Epub 2001 Mar 29. PMID:11283358
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V42
  • Retrieve 4V42 in mmCIF format [Save to disk]
  • View 4V42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V42
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v42 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v42_AC] [4v42_BR] [4v42_BG] [4v42_AO] [4v42_AW] [4v42_AR] [4v42] [4v42_BN] [4v42_BX] [4v42_AH] [4v42_AD] [4v42_BA] [4v42_BT] [4v42_BK] [4v42_AG] [4v42_BL] [4v42_AJ] [4v42_BP] [4v42_BJ] [4v42_BM] [4v42_BD] [4v42_BH] [4v42_BO] [4v42_AE] [4v42_AF] [4v42_AM] [4v42_BB] [4v42_AT] [4v42_BC] [4v42_AA] [4v42_BW] [4v42_AN] [4v42_BI] [4v42_AX] [4v42_AQ] [4v42_AS] [4v42_AV] [4v42_A1] [4v42_BF] [4v42_BS] [4v42_BV] [4v42_BU] [4v42_BE] [4v42_AU] [4v42_AK] [4v42_AB] [4v42_AP] [4v42_BQ] [4v42_AL] [4v42_AI]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V42: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4] [TRASH ] by SMART
  • Other resources with information on 4V42
  • Community annotation for 4V42 at PDBWiki (http://pdbwiki.org)

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