4V47 Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome date
authors Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Roey, P.Van., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 12.30
note 4V47 supersedes 1P6G, 1P85
Gene
Ontology
ChainFunctionProcessComponent
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  • translation repressor activi...


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  • nuclease activity
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  • ornithine decarboxylase inhi...


  • Primary referenceStudy of the structural dynamics of the E coli 70S ribosome using real-space refinement., Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey SC, Sali A, Chapman MS, Frank J, Cell. 2003 Jun 13;113(6):789-801. PMID:12809609
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V47
  • Retrieve 4V47 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V47 from S2C, [Save to disk]
  • View 4V47 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V47
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v47 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v47_BK] [4v47_A0] [4v47_AZ] [4v47_AF] [4v47_AD] [4v47_AR] [4v47_BC] [4v47_AN] [4v47_AQ] [4v47_A1] [4v47_BI] [4v47_BR] [4v47_A4] [4v47_AK] [4v47_BQ] [4v47_BF] [4v47_AA] [4v47_AL] [4v47_BE] [4v47_BJ] [4v47_BG] [4v47_BP] [4v47_AE] [4v47_BO] [4v47_AC] [4v47_AO] [4v47_BH] [4v47_AS] [4v47_BA] [4v47_BS] [4v47_BM] [4v47] [4v47_AH] [4v47_AJ] [4v47_AB] [4v47_AW] [4v47_BT] [4v47_AT] [4v47_BN] [4v47_AG] [4v47_AX] [4v47_AM] [4v47_A9] [4v47_AI] [4v47_BD] [4v47_BL] [4v47_AU]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V47: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V47
  • Community annotation for 4V47 at PDBWiki (http://pdbwiki.org)

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