4V4A Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome. date
authors Vila-Sanjurjo, A., Ridgeway, W.K., Seymaner, V., Zhang, W., Santoso, S., Yu, K., Cate, J.H.D.
compound source
symmetry
R_factor
R_Free 0.407
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 9.50
note 4V4A supersedes 1PNX, 1PNY
Gene
Ontology
ChainFunctionProcessComponent
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Primary referenceX-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli., Vila-Sanjurjo A, Ridgeway WK, Seymaner V, Zhang W, Santoso S, Yu K, Cate JH, Proc Natl Acad Sci U S A. 2003 Jul 22;100(15):8682-7. Epub 2003 Jul 9. PMID:12853578
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (876 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4A
  • Structure Factors (190 Kb)
  • Retrieve 4V4A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4A from S2C, [Save to disk]
  • View 4V4A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V4A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4a_AN] [4v4a_BS] [4v4a_AR] [4v4a_BU] [4v4a_B5] [4v4a_BY] [4v4a_BG] [4v4a] [4v4a_BH] [4v4a_AT] [4v4a_BM] [4v4a_AG] [4v4a_BF] [4v4a_BT] [4v4a_AI] [4v4a_BE] [4v4a_AM] [4v4a_BL] [4v4a_AA] [4v4a_BI] [4v4a_AB] [4v4a_AO] [4v4a_AL] [4v4a_B9] [4v4a_B4] [4v4a_AC] [4v4a_AK] [4v4a_BA] [4v4a_AQ] [4v4a_BB] [4v4a_BQ] [4v4a_BD] [4v4a_AE] [4v4a_B0] [4v4a_BX] [4v4a_AS] [4v4a_B2] [4v4a_AP] [4v4a_BP] [4v4a_BN] [4v4a_BO] [4v4a_BZ] [4v4a_BC] [4v4a_AH] [4v4a_AF] [4v4a_BJ] [4v4a_BW] [4v4a_BR] [4v4a_AD] [4v4a_B1] [4v4a_BV] [4v4a_B3] [4v4a_AJ] [4v4a_BK]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V4A: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V4A
  • Community annotation for 4V4A at PDBWiki (http://pdbwiki.org)

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