4V4G Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. date
authors Vila-Sanjurjo, A., Schuwirth, B.S., Hau, C.W., Cate, J.H.
compound source
symmetry
R_factor
R_Free 0.401
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 11.50
note 4V4G supersedes 1VOQ, 1VOR, 1VOS, 1VOU, 1VOV, 1VOW, 1VOX, 1VOY, 1VOZ, 1VP0
Gene
Ontology
ChainFunctionProcessComponent
AC, IC, GC, CC, EC


AH, IH, EH, CH, GH


AM, CM, GM, EM, IM


AO, GO, EO, CO, IO


AR, IR, GR, CR, ER


AT, IT, CT, ET, GT


B1, H1, D1, J1, F1


B6, F6, H6, J6, D6


BE, FE, DE, JE, HE


BF, JF, DF, FF, HF


BW, FW, HW, JW, DW


BY, FY, JY, HY, DY


CB, EB, GB, AB, IB


CD, AD, ID, ED, GD


CF, EF, AF, GF, IF


CI, GI, EI, AI, II


CK, EK, GK, AK, IK


CQ, EQ, AQ, IQ, GQ


D4, H4, B4, F4, J4


D7, F7, H7, B7, J7


DD, HD, JD, FD, BD


DI, FI, BI, HI, JI


DJ, BJ, HJ, JJ, FJ


EE, AE, GE, CE, IE


EG, GG, CG, AG, IG


EN, IN, GN, AN, CN


EP, IP, GP, CP, AP


FH, BH, HH, JH, DH


FO, DO, BO, HO, JO


FT, BT, HT, DT, JT


FX, HX, DX, JX, BX


FZ, DZ, JZ, BZ, HZ


GL, EL, IL, AL, CL


GS, CS, ES, IS, AS


H3, F3, B3, J3, D3


HL, BL, JL, DL, FL


HQ, FQ, BQ, DQ, JQ


HS, JS, DS, BS, FS


IJ, GJ, AJ, EJ, CJ


Ia, Ga, Ea, Ca, Aa


J2, H2, D2, F2, B2


J5, B5, F5, H5, D5


JG, DG, HG, FG, BG


JK, FK, DK, HK, BK


JM, DM, FM, BM, HM


JN, BN, HN, DN, FN


JP, DP, BP, FP, HP


JR, FR, BR, HR, DR


JU, HU, DU, FU, BU


JV, FV, DV, HV, BV


Primary referenceStructural basis for the control of translation initiation during stress., Vila-Sanjurjo A, Schuwirth BS, Hau CW, Cate JH, Nat Struct Mol Biol. 2004 Nov;11(11):1054-9. Epub 2004 Oct 24. PMID:15502846
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (886 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4G
  • Structure Factors (826 Kb)
  • Retrieve 4V4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4G from S2C, [Save to disk]
  • View 4V4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V4G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4g_CS] [4v4g_CE] [4v4g_BO] [4v4g_ED] [4v4g_B5] [4v4g_HA] [4v4g_D1] [4v4g_EE] [4v4g_CF] [4v4g_HU] [4v4g_BQ] [4v4g_BW] [4v4g_AI] [4v4g_HX] [4v4g_FI] [4v4g_FH] [4v4g_JP] [4v4g_Ga] [4v4g_CO] [4v4g_FM] [4v4g_BF] [4v4g_DH] [4v4g_AQ] [4v4g_D5] [4v4g_BX] [4v4g_EN] [4v4g_FX] [4v4g_EK] [4v4g_IB] [4v4g_F7] [4v4g_F1] [4v4g_FF] [4v4g_JI] [4v4g_J2] [4v4g_ES] [4v4g_HV] [4v4g_HE] [4v4g_B7] [4v4g_AH] [4v4g_AJ] [4v4g_EG] [4v4g_HI] [4v4g_GF] [4v4g_FZ] [4v4g_EO] [4v4g_BV] [4v4g_AP] [4v4g_BG] [4v4g_IJ] [4v4g_GN] [4v4g_GM] [4v4g_DE] [4v4g_DL] [4v4g_IM] [4v4g_JO] [4v4g_CD] [4v4g_BP] [4v4g_GC] [4v4g_AT] [4v4g_DI] [4v4g_HH] [4v4g_ER] [4v4g_IT] [4v4g_EA] [4v4g_HS] [4v4g_H2] [4v4g_CI] [4v4g_IK] [4v4g_CP] [4v4g_GH] [4v4g_CK] [4v4g_HL] [4v4g_EB] [4v4g_HK] [4v4g_GO] [4v4g_ID] [4v4g_GA] [4v4g_GE] [4v4g_FU] [4v4g_CR] [4v4g_F4] [4v4g_J4] [4v4g_FA] [4v4g_AK] [4v4g_DA] [4v4g_AC] [4v4g_FD] [4v4g_DD] [4v4g_AN] [4v4g_FQ] [4v4g_BS] [4v4g_JM] [4v4g_FL] [4v4g_FP] [4v4g_BN] [4v4g_B6] [4v4g_GL] [4v4g_DF] [4v4g_HQ] [4v4g_BJ] [4v4g_HB] [4v4g_BM] [4v4g_IR] [4v4g_AF] [4v4g_HZ] [4v4g_EC] [4v4g_EL] [4v4g_JW] [4v4g_CH] [4v4g_HG] [4v4g_DM] [4v4g_EQ] [4v4g_H6] [4v4g_J5] [4v4g_DQ] [4v4g_HT] [4v4g_D2] [4v4g_JT] [4v4g_IP] [4v4g_FR] [4v4g_GG] [4v4g_AB] [4v4g_BB] [4v4g_DV] [4v4g_HW] [4v4g_IA] [4v4g_J7] [4v4g_DP] [4v4g_DS] [4v4g_BK] [4v4g_HO] [4v4g_HF] [4v4g_IO] [4v4g_BE] [4v4g_JK] [4v4g_JJ] [4v4g_J1] [4v4g_CA] [4v4g_JX] [4v4g_DK] [4v4g_AG] [4v4g_ET] [4v4g_H4] [4v4g_JS] [4v4g_IQ] [4v4g_AA] [4v4g_Ia] [4v4g_EF] [4v4g_IS] [4v4g_B4] [4v4g_JY] [4v4g_D4] [4v4g_J3] [4v4g_IN] [4v4g_FY] [4v4g_AR] [4v4g_FB] [4v4g_IG] [4v4g_IE] [4v4g_B3] [4v4g_EI] [4v4g_GB] [4v4g_HP] [4v4g_JN] [4v4g_BL] [4v4g_HN] [4v4g_FG] [4v4g_HD] [4v4g_GP] [4v4g_DB] [4v4g_CL] [4v4g_CN] [4v4g_D6] [4v4g_IL] [4v4g_GS] [4v4g_EM] [4v4g_IC] [4v4g_FO] [4v4g_DZ] [4v4g_AM] [4v4g_BI] [4v4g_JD] [4v4g_D3] [4v4g_JH] [4v4g_AE] [4v4g_F3] [4v4g_DR] [4v4g_EP] [4v4g_DX] [4v4g_JG] [4v4g_JF] [4v4g_F2] [4v4g_DN] [4v4g_GD] [4v4g_GR] [4v4g_DG] [4v4g_GI] [4v4g_FK] [4v4g_JQ] [4v4g_F5] [4v4g_BU] [4v4g_H7] [4v4g_JA] [4v4g_CQ] [4v4g_CB] [4v4g_Ea] [4v4g_HR] [4v4g_BD] [4v4g_DT] [4v4g_EH] [4v4g_FN] [4v4g_JL] [4v4g_FT] [4v4g_F6] [4v4g_FS] [4v4g] [4v4g_EJ] [4v4g_FV] [4v4g_J6] [4v4g_BY] [4v4g_AO] [4v4g_Aa] [4v4g_HJ] [4v4g_IF] [4v4g_GJ] [4v4g_BH] [4v4g_BA] [4v4g_CT] [4v4g_II] [4v4g_H1] [4v4g_JV] [4v4g_JU] [4v4g_DU] [4v4g_GQ] [4v4g_B1] [4v4g_AS] [4v4g_FE] [4v4g_CG] [4v4g_CJ] [4v4g_D7] [4v4g_H3] [4v4g_JE] [4v4g_Ca] [4v4g_FW] [4v4g_JB] [4v4g_B2] [4v4g_JZ] [4v4g_AL] [4v4g_BR] [4v4g_CC] [4v4g_HM] [4v4g_H5] [4v4g_GT] [4v4g_HY] [4v4g_JR] [4v4g_DY] [4v4g_DJ] [4v4g_GK] [4v4g_CM] [4v4g_BZ] [4v4g_AD] [4v4g_DO] [4v4g_DW] [4v4g_FJ] [4v4g_BT] [4v4g_IH]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V4G: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V4G
  • Community annotation for 4V4G at PDBWiki (http://pdbwiki.org)

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