4V4P Ribosome date 5-0 20, 1999
authors L.Jenner, P.Romby, B.Rees, C.Schulze-Briese, M.Springer, C.E B.Ehresmann, D.Moras, G.Yusupova, M.Yusupov
compound source
symmetry Space Group: I 4 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
508.640 508.640 806.250 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V4P supersedes 1YL3, 1YL4
Gene
Ontology
ChainFunctionProcessComponent
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Primary referenceTranslational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding., Jenner L, Romby P, Rees B, Schulze-Briese C, Springer M, Ehresmann C, Ehresmann B, Moras D, Yusupova G, Yusupov M, Science. 2005 Apr 1;308(5718):120-3. PMID:15802605
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1806 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4P
  • Structure Factors (1563 Kb)
  • Retrieve 4V4P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4P from S2C, [Save to disk]
  • View 4V4P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V4P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v4p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4p_AA] [4v4p_A8] [4v4p_AG] [4v4p_B1] [4v4p_AN] [4v4p_AQ] [4v4p_A2] [4v4p_BB] [4v4p_BQ] [4v4p_BC] [4v4p_BH] [4v4p_A1] [4v4p_A4] [4v4p_BK] [4v4p_A7] [4v4p_AH] [4v4p_BE] [4v4p_BL] [4v4p_AP] [4v4p_BR] [4v4p_BS] [4v4p_AU] [4v4p_BA] [4v4p_AT] [4v4p_BF] [4v4p_BW] [4v4p_BP] [4v4p_AK] [4v4p_AC] [4v4p_AL] [4v4p_AS] [4v4p_AW] [4v4p_AJ] [4v4p_AI] [4v4p] [4v4p_BI] [4v4p_A3] [4v4p_BM] [4v4p_BX] [4v4p_BO] [4v4p_AX] [4v4p_BJ] [4v4p_A6] [4v4p_BG] [4v4p_AE] [4v4p_AF] [4v4p_BT] [4v4p_A0] [4v4p_AB] [4v4p_AR] [4v4p_AD] [4v4p_BN] [4v4p_BU] [4v4p_AV] [4v4p_BV] [4v4p_AM] [4v4p_A5] [4v4p_AO] [4v4p_A9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V4P: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4] [TRASH ] by SMART
  • Other resources with information on 4V4P
  • Community annotation for 4V4P at PDBWiki (http://pdbwiki.org)

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