4V4R Ribosome date 5-0 20, 1997
authors S.Petry, D.E.Brodersen, F.V.Murphy Iv, C.M.Dunham, M.Selmer, M.J.Tarry, A.C.Kelley, V.Ramakrishnan
compound source
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
518.993 518.993 365.139 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V4R supersedes 2B64, 2B66
Gene
Ontology
ChainFunctionProcessComponent
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Primary referenceCrystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon., Petry S, Brodersen DE, Murphy FV 4th, Dunham CM, Selmer M, Tarry MJ, Kelley AC, Ramakrishnan V, Cell. 2005 Dec 29;123(7):1255-66. PMID:16377566
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (982 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4R
  • Structure Factors (1234 Kb)
  • Retrieve 4V4R in mmCIF format [Save to disk]
  • View 4V4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V4R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v4r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4r_B0] [4v4r_BK] [4v4r_AE] [4v4r_AH] [4v4r_B9] [4v4r_BS] [4v4r_BQ] [4v4r_B2] [4v4r_BU] [4v4r_BF] [4v4r_B7] [4v4r_BA] [4v4r_BN] [4v4r_AJ] [4v4r_AU] [4v4r_BI] [4v4r_AB] [4v4r_AF] [4v4r_B5] [4v4r_BH] [4v4r_AI] [4v4r_AD] [4v4r_BD] [4v4r_BP] [4v4r_BB] [4v4r_AP] [4v4r_AQ] [4v4r_BG] [4v4r_BW] [4v4r_BT] [4v4r_AN] [4v4r_AA] [4v4r_AC] [4v4r_BZ] [4v4r] [4v4r_AO] [4v4r_BV] [4v4r_AG] [4v4r_BE] [4v4r_AM] [4v4r_BY] [4v4r_AX] [4v4r_AV] [4v4r_AR] [4v4r_BO] [4v4r_AS] [4v4r_BR] [4v4r_B3] [4v4r_AY] [4v4r_AL] [4v4r_B6] [4v4r_AT] [4v4r_B8] [4v4r_AK] [4v4r_BX] [4v4r_B4] [4v4r_AW]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V4R: [KH] [KOW] [PCRF] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4] [TRASH ] by SMART
  • Other resources with information on 4V4R
  • Community annotation for 4V4R at PDBWiki (http://pdbwiki.org)

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