4V51 Ribosome date 6-0 20, 1997
authors M.Selmer, C.M.Dunham, F.V.Murphy, A.Weixlbaumer, S.Petry, J. A.C.Kelley, V.Ramakrishnan
compound source
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
213.318 452.953 631.356 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V51 supersedes 2J00, 2J01, 2J02, 2J03
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT


AU, CU


B0, D0


B1, D1


B3, D3


B4, D4


B6, D6


B7, D7


BC, DC


BE, DE


BF, DF


BN, DN


BO, DO


BQ, DQ


BS, DS


BT, DT


BW, DW


BX, DX


BY, DY


CD, AD


CE, AE


CF, AF


CG, AG


CJ, AJ


CK, AK


CP, AP


CQ, AQ


CR, AR


D2, B2


D5, B5


D8, B8


DD, BD


DG, BG


DH, BH


DI, BI


DP, BP


DR, BR


DU, BU


DV, BV


DZ, BZ


Primary referenceStructure of the 70S ribosome complexed with mRNA and tRNA., Selmer M, Dunham CM, Murphy FV 4th, Weixlbaumer A, Petry S, Kelley AC, Weir JR, Ramakrishnan V, Science. 2006 Sep 29;313(5795):1935-42. Epub 2006 Sep 7. PMID:16959973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1165 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V51
  • Structure Factors (10711 Kb)
  • Retrieve 4V51 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V51 from S2C, [Save to disk]
  • View 4V51 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V51
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v51 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v51_AR] [4v51_CY] [4v51_CK] [4v51_D0] [4v51_BP] [4v51_B4] [4v51_CU] [4v51_AX] [4v51_DV] [4v51_AD] [4v51_DO] [4v51_BX] [4v51_B2] [4v51_CS] [4v51_AO] [4v51_BR] [4v51_CA] [4v51_AG] [4v51_B7] [4v51_CD] [4v51_BE] [4v51_AA] [4v51_CQ] [4v51_DI] [4v51_BC] [4v51_CM] [4v51_D1] [4v51_BU] [4v51_AH] [4v51_AI] [4v51_AF] [4v51_DN] [4v51_CR] [4v51_B3] [4v51_AB] [4v51_D4] [4v51_CL] [4v51_AE] [4v51_AK] [4v51_B8] [4v51_AC] [4v51_CX] [4v51_BV] [4v51_AU] [4v51_BT] [4v51_DW] [4v51_BA] [4v51_DY] [4v51_DE] [4v51_AW] [4v51_AV] [4v51_BF] [4v51_DZ] [4v51_BY] [4v51_D7] [4v51_DS] [4v51_DD] [4v51_AN] [4v51_DU] [4v51_CN] [4v51_DT] [4v51_AS] [4v51_B0] [4v51_DB] [4v51_B5] [4v51_DC] [4v51_D6] [4v51_D5] [4v51_BH] [4v51] [4v51_AT] [4v51_CV] [4v51_AL] [4v51_BG] [4v51_AQ] [4v51_DP] [4v51_D3] [4v51_D8] [4v51_AM] [4v51_CF] [4v51_BW] [4v51_CE] [4v51_BS] [4v51_BQ] [4v51_DH] [4v51_DX] [4v51_CH] [4v51_D2] [4v51_BN] [4v51_AJ] [4v51_BO] [4v51_CJ] [4v51_B6] [4v51_BD] [4v51_DR] [4v51_BI] [4v51_CB] [4v51_DQ] [4v51_CW] [4v51_BB] [4v51_DF] [4v51_CP] [4v51_CC] [4v51_B1] [4v51_DA] [4v51_CI] [4v51_DG] [4v51_BZ] [4v51_AY] [4v51_CT] [4v51_CG] [4v51_CO] [4v51_AP]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V51: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V51
  • Community annotation for 4V51 at PDBWiki (http://pdbwiki.org)

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