4V5L The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog date
authors Voorhees, R.M., Schmeing, T.M., Ramakrishnan, V.
compound source
symmetry
R_factor
R_Free 0.2681
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
note 4V5L supersedes 2XQD, 2XQE
Gene
Ontology
ChainFunctionProcessComponent
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Primary referenceThe mechanism for activation of GTP hydrolysis on the ribosome., Voorhees RM, Schmeing TM, Kelley AC, Ramakrishnan V, Science. 2010 Nov 5;330(6005):835-8. PMID:21051640
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1280 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V5L
  • Structure Factors (4464 Kb)
  • Retrieve 4V5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V5L from S2C, [Save to disk]
  • View 4V5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V5L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v5l_BV] [4v5l_B1] [4v5l_AX] [4v5l_AK] [4v5l_BA] [4v5l_B6] [4v5l_BW] [4v5l_B2] [4v5l_AG] [4v5l_AA] [4v5l_AS] [4v5l_BX] [4v5l_BJ] [4v5l_AC] [4v5l_BE] [4v5l_AE] [4v5l_AQ] [4v5l_B5] [4v5l_BT] [4v5l_BB] [4v5l_B7] [4v5l_B9] [4v5l_BN] [4v5l_BK] [4v5l_BU] [4v5l_AR] [4v5l_AD] [4v5l_AT] [4v5l_BG] [4v5l_AB] [4v5l_AM] [4v5l_BD] [4v5l_BR] [4v5l_AW] [4v5l_AY] [4v5l_BQ] [4v5l_AH] [4v5l_AO] [4v5l_BZ] [4v5l] [4v5l_AZ] [4v5l_AP] [4v5l_BS] [4v5l_B8] [4v5l_AL] [4v5l_BH] [4v5l_AV] [4v5l_B3] [4v5l_BP] [4v5l_B0] [4v5l_BO] [4v5l_AI] [4v5l_BY] [4v5l_AU] [4v5l_B4] [4v5l_AJ] [4v5l_AF] [4v5l_AN] [4v5l_BC] [4v5l_BF]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V5L: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V5L
  • Community annotation for 4V5L at PDBWiki (http://pdbwiki.org)

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