4V5X Dna date 2-1 20, 2000
authors X.C.Bai, T.G.Martin, S.H.W.Scheres, H.Dietz
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V5X supersedes 2YMF, 2YMG, 2YMH, 2YMI, 2YMR
Primary referenceCryo-EM structure of a 3D DNA-origami object., Bai XC, Martin TG, Scheres SH, Dietz H, Proc Natl Acad Sci U S A. 2012 Nov 19. PMID:23169645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1642 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V5X
  • Retrieve 4V5X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V5X from S2C, [Save to disk]
  • View 4V5X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V5X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v5x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v5x_CK] [4v5x_BY] [4v5x_BS] [4v5x_BI] [4v5x_BE] [4v5x_Ch] [4v5x_Ba] [4v5x_Ce] [4v5x_CR] [4v5x_C1] [4v5x_An] [4v5x_Cy] [4v5x_C7] [4v5x_CQ] [4v5x_A4] [4v5x_AX] [4v5x_CF] [4v5x_CJ] [4v5x_Cp] [4v5x_Bc] [4v5x_BN] [4v5x_Ck] [4v5x_A0] [4v5x_Bb] [4v5x_A1] [4v5x_Bn] [4v5x_AA] [4v5x_Cu] [4v5x_B9] [4v5x_BC] [4v5x_Ak] [4v5x_BV] [4v5x_AM] [4v5x_Aw] [4v5x_CH] [4v5x_Bh] [4v5x_Ao] [4v5x_BQ] [4v5x_Cq] [4v5x_C8] [4v5x_CO] [4v5x_BM] [4v5x_Bj] [4v5x_BT] [4v5x_BX] [4v5x_B6] [4v5x_Al] [4v5x_BW] [4v5x_AV] [4v5x_Cz] [4v5x_Ag] [4v5x_Cw] [4v5x_B8] [4v5x_BF] [4v5x_A6] [4v5x_Be] [4v5x_AS] [4v5x_AD] [4v5x_BA] [4v5x_Ai] [4v5x_CE] [4v5x_Ax] [4v5x_Bk] [4v5x_Bq] [4v5x_A5] [4v5x_Ct] [4v5x_A7] [4v5x_Br] [4v5x_A3] [4v5x_AT] [4v5x_B0] [4v5x_Ac] [4v5x_AR] [4v5x_Az] [4v5x_CD] [4v5x_BB] [4v5x_Cs] [4v5x_Bl] [4v5x_Au] [4v5x_BJ] [4v5x_B7] [4v5x_As] [4v5x_C5] [4v5x_C3] [4v5x_C0] [4v5x_Cx] [4v5x_BG] [4v5x_BP] [4v5x_CZ] [4v5x_BK] [4v5x_BR] [4v5x_CY] [4v5x_CW] [4v5x_Av] [4v5x_AN] [4v5x_CM] [4v5x_CS] [4v5x_Cf] [4v5x_CB] [4v5x_BD] [4v5x_AQ] [4v5x_AL] [4v5x_Bi] [4v5x_AH] [4v5x_CL] [4v5x_B5] [4v5x_AC] [4v5x_AK] [4v5x_BH] [4v5x_BZ] [4v5x_AO] [4v5x_AE] [4v5x_C2] [4v5x_AU] [4v5x_Bp] [4v5x_C4] [4v5x_Ad] [4v5x_AW] [4v5x_Cb] [4v5x_BU] [4v5x_CU] [4v5x_Bd] [4v5x_Cg] [4v5x_AJ] [4v5x_BO] [4v5x_Ah] [4v5x_CN] [4v5x] [4v5x_AI] [4v5x_Cv] [4v5x_CT] [4v5x_B4] [4v5x_AY] [4v5x_Am] [4v5x_Af] [4v5x_B3] [4v5x_CI] [4v5x_Cd] [4v5x_C6] [4v5x_Ab] [4v5x_B1] [4v5x_Ay] [4v5x_Cc] [4v5x_Bg] [4v5x_AP] [4v5x_AG] [4v5x_Bf] [4v5x_Cr] [4v5x_AB] [4v5x_AF] [4v5x_A8] [4v5x_Bm] [4v5x_B2] [4v5x_CX] [4v5x_Bo] [4v5x_A2] [4v5x_Bs] [4v5x_Aj] [4v5x_CV] [4v5x_AZ] [4v5x_BL] [4v5x_CG] [4v5x_CC] [4v5x_CP]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4V5X
  • Community annotation for 4V5X at PDBWiki (http://pdbwiki.org)

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