4V68 T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. date
authors Schuette, J.C., Spahn, C.M.T.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 6.40
note 4V68 supersedes 3FIC, 3FIN
Gene
Ontology
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Primary referenceGTPase activation of elongation factor EF-Tu by the ribosome during decoding., Schuette JC, Murphy FV 4th, Kelley AC, Weir JR, Giesebrecht J, Connell SR, Loerke J, Mielke T, Zhang W, Penczek PA, Ramakrishnan V, Spahn CM, EMBO J. 2009 Mar 18;28(6):755-65. Epub 2009 Feb 19. PMID:19229291
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1241 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V68
  • Retrieve 4V68 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V68 from S2C, [Save to disk]
  • View 4V68 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V68
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v68_AJ] [4v68_B1] [4v68_B4] [4v68_BV] [4v68_AP] [4v68_AB] [4v68_A0] [4v68_B6] [4v68_AG] [4v68_BP] [4v68_BG] [4v68_BO] [4v68_BR] [4v68_BU] [4v68_AA] [4v68_AE] [4v68_BY] [4v68_AF] [4v68_BZ] [4v68_AL] [4v68_AX] [4v68_BS] [4v68_B3] [4v68_BF] [4v68_AT] [4v68_BX] [4v68_BL] [4v68_AN] [4v68_BQ] [4v68_BI] [4v68_AI] [4v68_BT] [4v68_BN] [4v68_B7] [4v68_B5] [4v68_BA] [4v68] [4v68_AH] [4v68_BH] [4v68_AD] [4v68_AK] [4v68_AQ] [4v68_AO] [4v68_BW] [4v68_AS] [4v68_BB] [4v68_B0] [4v68_B2] [4v68_B8] [4v68_AV] [4v68_BE] [4v68_AW] [4v68_AC] [4v68_AZ] [4v68_AM] [4v68_BD] [4v68_BC] [4v68_B9] [4v68_AY] [4v68_AU] [4v68_AR]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V68: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V68
  • Community annotation for 4V68 at PDBWiki (http://pdbwiki.org)

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