OCA Atlas for 4V6G

4V6G

Initiation complex of 70S ribosome with two tRNAs and mRNA.

date

authors

Jenner, L.B., Yusupova, G., Yusupov, M.

compound

source

symmetry

R_factor

R_Free

0.252

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

3.50

note

4V6G supersedes 3I9B, 3I9C, 3I9D, 3I9E

Gene
Ontology

Chain	Function	Process	Component
AH, CH
AI, CI
AL, CL
AM, CM
AN, CN
AO, CO
AS, CS
AT, CT
AU, CU
AX, CX
B0, D0
B1, D1
B3, D3
B4, D4
B6, D6
B7, D7
BE, DE
BF, DF
BN, DN
BO, DO
BQ, DQ
BS, DS
BT, DT
BW, DW
BX, DX
CE, AE
CF, AF
CG, AG
CJ, AJ
CK, AK
CP, AP
CQ, AQ
CR, AR
CV, AV
CW, AW
D2, B2
D5, B5
D8, B8
DD, BD
DG, BG
DH, BH
DK, BK
DM, BM
DP, BP
DR, BR
DU, BU
DV, BV
DZ, BZ

Primary reference

Structural aspects of messenger RNA reading frame maintenance by the ribosome., Jenner LB, Demeshkina N, Yusupova G, Yusupov M, Nat Struct Mol Biol. 2010 May;17(5):555-60. Epub 2010 Apr 18. PMID:20400952

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1100 Kb) [Save to disk]

CSU: Contacts of Structural Units for 4V6G

Structure Factors (9454 Kb)

Retrieve 4V6G in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4V6G from S2C, [Save to disk]

View 4V6G in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V6G

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v6g_AM] [4v6g_AG] [4v6g_AX] [4v6g_BU] [4v6g_CT] [4v6g_BT] [4v6g_AN] [4v6g_BB] [4v6g_AI] [4v6g_DK] [4v6g_BE] [4v6g_BZ] [4v6g_CP] [4v6g_C1] [4v6g_AL] [4v6g_DX] [4v6g_AE] [4v6g_D8] [4v6g_CO] [4v6g_BO] [4v6g_B7] [4v6g_CX] [4v6g_D4] [4v6g_DP] [4v6g_AA] [4v6g_CU] [4v6g_DA] [4v6g_CS] [4v6g_AR] [4v6g_DE] [4v6g_DF] [4v6g_D6] [4v6g_AS] [4v6g_AC] [4v6g_BN] [4v6g_A1] [4v6g_BF] [4v6g_BM] [4v6g_AU] [4v6g_DQ] [4v6g_DO] [4v6g_CR] [4v6g_DD] [4v6g_B1] [4v6g_D7] [4v6g_BP] [4v6g_CQ] [4v6g_CN] [4v6g_DM] [4v6g_B6] [4v6g_AT] [4v6g_AP] [4v6g_CI] [4v6g_CM] [4v6g_CF] [4v6g_DZ] [4v6g_B0] [4v6g_AQ] [4v6g_CG] [4v6g_AW] [4v6g_CW] [4v6g_DU] [4v6g_DR] [4v6g_B2] [4v6g_CE] [4v6g_BV] [4v6g_D0] [4v6g_DG] [4v6g_B8] [4v6g_CV] [4v6g_BD] [4v6g_CL] [4v6g_B3] [4v6g_DS] [4v6g_B4] [4v6g_BA] [4v6g_AF] [4v6g_D2] [4v6g_DT] [4v6g_CK] [4v6g_BQ] [4v6g_DW] [4v6g_AH] [4v6g_B5] [4v6g_BH] [4v6g_CH] [4v6g_AD] [4v6g_DN] [4v6g_D1] [4v6g_BX] [4v6g_CB] [4v6g_CA] [4v6g_DH] [4v6g_DB] [4v6g_CC] [4v6g_D5] [4v6g_BR] [4v6g_BS] [4v6g_D3] [4v6g_BK] [4v6g_BW] [4v6g_CD] [4v6g_CJ] [4v6g_AO] [4v6g_AJ] [4v6g_AV] [4v6g] [4v6g_BG] [4v6g_AK] [4v6g_DV]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 4V6G: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

Other resources with information on 4V6G

Community annotation for 4V6G at PDBWiki (http://pdbwiki.org)

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