4V6U Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications for evolution of eukaryotic ribosomes date
authors Armache, J.P., Anger, A.M., Marquez, V., Frankenberg, S., Froehlich, T., Villa, E., Berninghausen, O., Thomm, M., Arnold, G.J., Beckmann, R., Wilson, D.N.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 6.60
note 4V6U supersedes 3J20, 3J21, 3J2L
Gene
Ontology
ChainFunctionProcessComponent
AA


AB


AC


AD


AE


AF


AG


AH


AI


AJ


AK


AL


AM


AN


AO


AP


AQ


AR


AS


AT


AU


AW


AX


AY


B4, BG, A3
  • ribonuclease P activity


  • B5, BK


    B6, AV


    BA


    BB


    BC


    BD


    BE


    BF


    BH


    BI


    BJ


    BL


    BM


    BN


    BO


    BP


    BQ


    BR


    BS


    BT


    BU


    BV


    BW


    BY


    BZ


    Ba


    Bb


    Bc


    Bd


    Be


    Bf


    Bg


    Bi


    Bj


    Bk


    Bl


    Primary referencePromiscuous behaviour of archaeal ribosomal proteins: Implications for eukaryotic ribosome evolution., Armache JP, Anger AM, Marquez V, Franckenberg S, Frohlich T, Villa E, Berninghausen O, Thomm M, Arnold GJ, Beckmann R, Wilson DN, Nucleic Acids Res. 2012 Dec 6. PMID:23222135
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1666 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V6U
  • Retrieve 4V6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V6U from S2C, [Save to disk]
  • View 4V6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V6U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v6u_Bk] [4v6u_AP] [4v6u_AK] [4v6u_Bi] [4v6u_BO] [4v6u_BC] [4v6u_AH] [4v6u_AR] [4v6u_BW] [4v6u_BN] [4v6u_AG] [4v6u_AM] [4v6u_BP] [4v6u] [4v6u_AI] [4v6u_AC] [4v6u_B4] [4v6u_BK] [4v6u_B3] [4v6u_Bf] [4v6u_AJ] [4v6u_BG] [4v6u_AW] [4v6u_AO] [4v6u_AT] [4v6u_A3] [4v6u_AV] [4v6u_BZ] [4v6u_BD] [4v6u_BL] [4v6u_Bb] [4v6u_BY] [4v6u_AY] [4v6u_Bd] [4v6u_AQ] [4v6u_BR] [4v6u_AD] [4v6u_BM] [4v6u_B6] [4v6u_BJ] [4v6u_BE] [4v6u_BF] [4v6u_A2] [4v6u_AN] [4v6u_BU] [4v6u_B1] [4v6u_AA] [4v6u_BI] [4v6u_BV] [4v6u_Ba] [4v6u_A0] [4v6u_Bl] [4v6u_A1] [4v6u_BS] [4v6u_AB] [4v6u_Bj] [4v6u_BB] [4v6u_AF] [4v6u_BA] [4v6u_AS] [4v6u_BT] [4v6u_BH] [4v6u_Bg] [4v6u_AL] [4v6u_B5] [4v6u_AU] [4v6u_BQ] [4v6u_AE] [4v6u_A9] [4v6u_AX] [4v6u_Bc] [4v6u_Be] [4v6u_Bh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V6U: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [TRASH ] by SMART
  • Other resources with information on 4V6U
  • Community annotation for 4V6U at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science