4V6X
Structure of the human 80S ribosome
date
authors
Anger, A.M., Armache, J.P., Berninghausen, O., Habeck, M., Subklewe, M., Wilson, D.N., Beckmann, R.
compound
source
symmetry
R_factor
R_Free
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
5.00
note
4V6X supersedes
3J3A
,
3J3B
,
3J3D
,
3J3F
Gene
Ontology
Chain
Function
Process
Component
AA
virus receptor activity
cytosolic small ribosomal su...
AB
cytosolic small ribosomal su...
AC
cytosolic small ribosomal su...
AD
cytosolic small ribosomal su...
AE
ribosome
cytosolic small ribosomal su...
AF
cytosolic small ribosomal su...
AG
cytosolic small ribosomal su...
AH
cytosolic small ribosomal su...
AI
cytosolic small ribosomal su...
AJ
cytosolic small ribosomal su...
AK
cytosolic small ribosomal su...
AL
cytosolic small ribosomal su...
AM
cytosolic small ribosomal su...
AN
cytosolic small ribosomal su...
AO
translation regulator activi...
cytosolic small ribosomal su...
AP
cytosolic small ribosomal su...
AQ
cytosolic small ribosomal su...
AR
cytosolic small ribosomal su...
AS
small ribosomal subunit
cytosolic small ribosomal su...
AT
cytosolic small ribosomal su...
AU
cytosolic small ribosomal su...
AV
cytosolic small ribosomal su...
AW
cytosolic small ribosomal su...
AX
cytosolic small ribosomal su...
AY
small ribosomal subunit
cytosolic small ribosomal su...
AZ
small ribosomal subunit
cytosolic small ribosomal su...
Aa
small ribosomal subunit
cytosolic small ribosomal su...
Ab
cytosolic small ribosomal su...
Ac
small ribosomal subunit
cytosolic small ribosomal su...
Ad
small ribosomal subunit
cytosolic small ribosomal su...
Ae
small ribosomal subunit
cytosolic small ribosomal su...
Af
Ag
protein tyrosine kinase inhi...
Ah
Az
CA
CB
CC
CD
CE
CF
CG
CH
CI
CJ
CK
CL
CM
CN
CO
CP
CQ
CR
CS
CT
CU
CV
CW
CX
CY
CZ
Ca
Cb
Cc
Cd
Ce
Cf
Cg
Ch
Ci
Cj
Ck
Cl
Cm
Cn
Co
cytosolic large ribosomal su...
Cp
Cq
Cr
Ct, Cs
protein kinase activator act...
Cu, Cv
Cz
Primary reference
Structures of the human and Drosophila 80S ribosome., Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R, Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104. PMID:
23636399
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(1691 Kb)
[Save to disk]
CSU:
Contacts of Structural Units
for 4V6X
Retrieve 4V6X in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
4V6X
from
S2C
,
[Save to disk]
View 4V6X in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 4V6X
Ramachandran
plot from
PDBSum
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[4v6x_CM]
[4v6x_Ca]
[4v6x_AY]
[4v6x_Cu]
[4v6x_Ck]
[4v6x_Cv]
[4v6x_AA]
[4v6x_Ae]
[4v6x_Cp]
[4v6x_AQ]
[4v6x_Cb]
[4v6x_Ct]
[4v6x_Co]
[4v6x_Cj]
[4v6x_CP]
[4v6x_CU]
[4v6x_AK]
[4v6x_AV]
[4v6x_Cf]
[4v6x_AR]
[4v6x_Cd]
[4v6x_A7]
[4v6x_A8]
[4v6x_B2]
[4v6x_AO]
[4v6x_CZ]
[4v6x_Cz]
[4v6x_AX]
[4v6x_CH]
[4v6x_CJ]
[4v6x_Aa]
[4v6x_AC]
[4v6x_AH]
[4v6x_BC]
[4v6x_CX]
[4v6x_CI]
[4v6x_Az]
[4v6x_CK]
[4v6x_CY]
[4v6x_AW]
[4v6x_Ci]
[4v6x_AG]
[4v6x_CN]
[4v6x_CF]
[4v6x_CC]
[4v6x_Cq]
[4v6x_CL]
[4v6x_AJ]
[4v6x_Cs]
[4v6x_Cm]
[4v6x_CG]
[4v6x_CA]
[4v6x_CR]
[4v6x_Cl]
[4v6x_AP]
[4v6x]
[4v6x_CT]
[4v6x_A5]
[4v6x_Cg]
[4v6x_CB]
[4v6x_AF]
[4v6x_Ce]
[4v6x_Cn]
[4v6x_AT]
[4v6x_AN]
[4v6x_AU]
[4v6x_AB]
[4v6x_CD]
[4v6x_CO]
[4v6x_Cc]
[4v6x_AE]
[4v6x_CE]
[4v6x_AZ]
[4v6x_Ad]
[4v6x_Ag]
[4v6x_Ab]
[4v6x_Af]
[4v6x_AI]
[4v6x_AD]
[4v6x_CS]
[4v6x_CQ]
[4v6x_Ac]
[4v6x_AS]
[4v6x_CV]
[4v6x_AL]
[4v6x_Ch]
[4v6x_AM]
[4v6x_Cr]
[4v6x_CW]
[4v6x_Ah]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domains
found in 4V6X:
[EFG_C]
[EFG_IV]
[HABP4_PAI-RBP1]
[KH]
[KOW]
[RL11]
[Ribosomal_L14]
[Ribosomal_L15e]
[Ribosomal_L19e]
[Ribosomal_L2]
[Ribosomal_L2_C]
[Ribosomal_L31e]
[Ribosomal_L32e]
[Ribosomal_L40e]
[Ribosomal_S10]
[Ribosomal_S13_N]
[Ribosomal_S15]
[Ribosomal_S19e]
[Ribosomal_S27]
[Ribosomal_S3Ae]
[Ribosomal_S4]
[Ribosomal_S6e]
[S4]
[TRASH]
[WD40 ]
by
SMART
Other resources with information on 4V6X
Community annotation for
4V6X
at
PDBWiki
(http://pdbwiki.org)
You may enter another PDB ID code
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