4V7K Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) date
authors Neubauer, C., Gao, Y.G., Andersen, K.R., Dunham, C.M., Kelley, A.C., Hentschel, J., Gerdes, K., Ramakrishnan, V., Brodersen, D.E.
compound source
symmetry
R_factor
R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
note 4V7K supersedes 3KIU, 3KIW, 3KIX, 3KIY
Gene
Ontology
ChainFunctionProcessComponent
A2, B2


A8, B8


AC, BC


AD, BD


AG, BG


AH, BH


AJ, BJ


AO, BO


AR, BR


AT, BT


AU, BU


AV, BV


AY, BY


AZ, BZ


Ab, Bb


Ac, Bc


Ae, Be


Ag, Bg


Ah, Bh


Ak, Bk


Al, Bl


Am, Bm


At, Bt


Ay, By
  • bacterial-type RNA polymeras...
  • nuclease activity
  • endonuclease activity
  • endoribonuclease activity


  • B0, A0


    B1, A1


    B3, A3


    B4, A4


    B5, A5


    B6, A6


    B7, A7


    B9, A9


    BE, AE


    BF, AF


    BI, AI


    BN, AN


    BP, AP


    BQ, AQ


    BS, AS


    BW, AW


    BX, AX


    Bd, Ad


    Bf, Af


    Bi, Ai


    Bj, Aj


    Bn, An


    Bo, Ao


    Bp, Ap


    Bq, Aq


    Br, Ar


    Bs, As


    Bu, Au


    Primary referenceThe structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE., Neubauer C, Gao YG, Andersen KR, Dunham CM, Kelley AC, Hentschel J, Gerdes K, Ramakrishnan V, Brodersen DE, Cell. 2009 Dec 11;139(6):1084-95. PMID:20005802
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1665 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V7K
  • Structure Factors (5412 Kb)
  • Retrieve 4V7K in mmCIF format [Save to disk]
  • View 4V7K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V7K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v7k_B2] [4v7k_BN] [4v7k_BX] [4v7k_Br] [4v7k_Ak] [4v7k_B6] [4v7k_AQ] [4v7k_Ai] [4v7k_AT] [4v7k_A4] [4v7k_Aj] [4v7k_Aq] [4v7k_BE] [4v7k_Ac] [4v7k_A9] [4v7k_A8] [4v7k_Al] [4v7k_Bb] [4v7k_Ag] [4v7k_BS] [4v7k_An] [4v7k_A6] [4v7k_BJ] [4v7k_BR] [4v7k_Ap] [4v7k_AN] [4v7k_Bq] [4v7k_BQ] [4v7k_B0] [4v7k_Bg] [4v7k_As] [4v7k_Au] [4v7k_B7] [4v7k_BG] [4v7k_B4] [4v7k_Ad] [4v7k_Bk] [4v7k_Bx] [4v7k_BO] [4v7k_BB] [4v7k_B5] [4v7k_Bd] [4v7k_AZ] [4v7k_AC] [4v7k_BZ] [4v7k_AF] [4v7k_A5] [4v7k_AW] [4v7k_Ax] [4v7k_Ao] [4v7k_Bt] [4v7k_A2] [4v7k_BA] [4v7k_Ah] [4v7k_AI] [4v7k_Bc] [4v7k_Ay] [4v7k_AB] [4v7k_AH] [4v7k_Bn] [4v7k_B8] [4v7k_B9] [4v7k_Bh] [4v7k_Bi] [4v7k_A7] [4v7k_BT] [4v7k_Aa] [4v7k_Bp] [4v7k_BI] [4v7k_Bm] [4v7k_B1] [4v7k_A3] [4v7k_Bs] [4v7k_BY] [4v7k_Bf] [4v7k_BP] [4v7k_AO] [4v7k_Bw] [4v7k_Ar] [4v7k_Be] [4v7k_AA] [4v7k_Ab] [4v7k_BV] [4v7k_Av] [4v7k_AS] [4v7k_Bv] [4v7k_AR] [4v7k_Bl] [4v7k_BW] [4v7k_Af] [4v7k_A0] [4v7k_AD] [4v7k_A1] [4v7k_AP] [4v7k_AE] [4v7k_AJ] [4v7k_B3] [4v7k_Bu] [4v7k_BC] [4v7k_Bj] [4v7k_BH] [4v7k] [4v7k_Am] [4v7k_BD] [4v7k_Bo] [4v7k_AV] [4v7k_Ba] [4v7k_By] [4v7k_BF] [4v7k_AG] [4v7k_Aw] [4v7k_BU] [4v7k_At] [4v7k_AX] [4v7k_AY] [4v7k_AU] [4v7k_Ae]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V7K: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V7K
  • Community annotation for 4V7K at PDBWiki (http://pdbwiki.org)

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