4V98 Splicing date 2-0 20, 1999
authors C.Grimm, J.P.Pelz, H.Schindelin, K.Diederichs, J.Kuper, C.Ki
compound source
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.930 356.810 230.750 90.00 97.31 90.00
method X-Ray Diffractionresolution
note 4V98 supersedes 1VU2, 1VU3, 4F77
Gene DMEL ; DMEL ; DMEL
Gene
Ontology
ChainFunctionProcessComponent
AC, BC, Ba, CK, CC, CS, Ay, Cq, AK, Bi, Bq, Ci, BS, Ca, By, Ai, AS, BK, Aq, Aa

  • catalytic step 2 spliceosome...
  • AT, CD, Cb, Az, Bz, Bj, CT, Cr, BT, Br, AD, Ab, Ar, BL, AL, Cj, Aj, CL, Bb, BD

  • catalytic step 2 spliceosome...
  • Ak, B1, Ck, BE, Bs, AM, CM, AE, A1, Bc, CE, AU, Cc, Ac, CU, As, Cs, BU, Bk, BM


    Ax, AJ, Bp, Cp, CB, Ap, AZ, BJ, Ah, AR, BR, BB, CZ, Ch, AB, CJ, Bx, CR, BZ, Bh

  • catalytic step 2 spliceosome...
  • BN, Al, Bd, BF, Ct, CF, At, Bt, Cl, AF, Bl, Cd, CV, AN, A2, CN, B2, AV, BV, Ad


    BP, Bf, Af, AH, Bn, Av, Cn, An, AX, Cv, CX, BH, A4, CP, AP, BX, B4, Cf, CH, Bv

  • catalytic step 2 spliceosome...
  • BW, AO, CW, B3, Ae, A3, AW, Bu, Am, BO, Cu, CG, AG, CO, Cm, Au, Bm, Be, BG, Ce


    CQ, AY, Cg, BY, AA, CA, BA, CI, Bg, Bw, BQ, Bo, Ag, BI, AI, AQ, Co, Ao, Aw, CY

  • catalytic step 2 spliceosome...
  • Primary referenceStructural Basis of Assembly Chaperone- Mediated snRNP Formation., Grimm C, Chari A, Pelz JP, Kuper J, Kisker C, Diederichs K, Stark H, Schindelin H, Fischer U, Mol Cell. 2013 Jan 15. pii: S1097-2765(12)01018-0. doi:, 10.1016/j.molcel.2012.12.009. PMID:23333303
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1038 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V98
  • Structure Factors (1450 Kb)
  • Retrieve 4V98 in mmCIF format [Save to disk]
  • View 4V98 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V98
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4v98 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v98_Bi] [4v98_Ad] [4v98_Ba] [4v98_Bz] [4v98_Au] [4v98_BB] [4v98_Ap] [4v98_Ax] [4v98_Bt] [4v98_AZ] [4v98_BQ] [4v98_CK] [4v98_AK] [4v98_Bf] [4v98_BV] [4v98_AW] [4v98_Cb] [4v98_AV] [4v98_Bc] [4v98_Cr] [4v98_AU] [4v98_Ag] [4v98_Cs] [4v98_A3] [4v98] [4v98_AO] [4v98_AQ] [4v98_Cn] [4v98_AH] [4v98_CI] [4v98_CW] [4v98_Ch] [4v98_BZ] [4v98_CC] [4v98_AD] [4v98_Ah] [4v98_AY] [4v98_Al] [4v98_Cd] [4v98_BE] [4v98_Co] [4v98_Av] [4v98_BU] [4v98_Cm] [4v98_Af] [4v98_Cg] [4v98_BY] [4v98_Bq] [4v98_B3] [4v98_At] [4v98_CQ] [4v98_Bh] [4v98_Am] [4v98_BH] [4v98_AF] [4v98_CB] [4v98_CY] [4v98_Aw] [4v98_CF] [4v98_B4] [4v98_Bb] [4v98_CV] [4v98_CP] [4v98_CX] [4v98_CD] [4v98_BS] [4v98_BM] [4v98_BT] [4v98_BL] [4v98_CR] [4v98_AC] [4v98_Az] [4v98_Cl] [4v98_CL] [4v98_AN] [4v98_Bn] [4v98_Bs] [4v98_BO] [4v98_By] [4v98_Cf] [4v98_Bp] [4v98_BW] [4v98_Bx] [4v98_CT] [4v98_CO] [4v98_AJ] [4v98_Bv] [4v98_An] [4v98_As] [4v98_Cu] [4v98_CH] [4v98_BK] [4v98_Ak] [4v98_Cc] [4v98_Ci] [4v98_BP] [4v98_A1] [4v98_BI] [4v98_Ca] [4v98_AM] [4v98_AP] [4v98_Ai] [4v98_CN] [4v98_CS] [4v98_Br] [4v98_Aa] [4v98_BN] [4v98_A2] [4v98_BG] [4v98_BR] [4v98_Bo] [4v98_CU] [4v98_AI] [4v98_B2] [4v98_AT] [4v98_B1] [4v98_Ck] [4v98_Bk] [4v98_BJ] [4v98_Bj] [4v98_Bu] [4v98_Ar] [4v98_BX] [4v98_Bl] [4v98_Aq] [4v98_CJ] [4v98_AG] [4v98_Ab] [4v98_AL] [4v98_Be] [4v98_CG] [4v98_Cq] [4v98_AE] [4v98_Ac] [4v98_BF] [4v98_Cp] [4v98_AX] [4v98_Bw] [4v98_Cv] [4v98_CM] [4v98_Bg] [4v98_AS] [4v98_Ct] [4v98_Ae] [4v98_Cj] [4v98_AR] [4v98_A4] [4v98_Aj] [4v98_AA] [4v98_Bd] [4v98_Ay] [4v98_CZ] [4v98_BC] [4v98_CA] [4v98_Bm] [4v98_AB] [4v98_BD] [4v98_CE] [4v98_Ao] [4v98_BA] [4v98_Ce]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4V98: [Sm ] by SMART
  • Other resources with information on 4V98
  • Community annotation for 4V98 at PDBWiki (http://pdbwiki.org)

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