4V99 The Crystallographic Structure of Panicum Mosaic Virus date
authors Makino, D.L., Larson, S.B., McPherson, A.
compound source
symmetry
R_factor
R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
note 4V99 supersedes 4FY1, 4FY2, 4FY3, 4FY4, 4FY5, 4FY6, 4FY7, 4FY8, 4FY9, 4FYA
Gene
Ontology
ChainFunctionProcessComponent
GV, Ef, JM, BC, Ey, CQ, B6, Jf, JU, FH, Iu, Cb, Ft, JG, Fp, DP, JR, Et, Gb, G6, JV, FC, CK, Af, Cz, IC, EK, AA, Eo, Bp, EP, BF, GC, AM, AH, Hj, Ia, Ga, CF, Dk, BA, Jv, Ie, H6, EA, At, Fl, CC, A1, Bt, Jb, Ep, HQ, Ap, EF, EU, FQ, Dy, Iz, Ab, Fg, IV, C5, AZ, AF, Ip, J5, FM, EB, Bl, Cv, Ho, Gg, GM, GK, IH, HL, Dp, B5, Gt, Dt, Fo, D4, HH, F5, IL, GG, HU, It, BQ, FA, BB, HV, Dz, DK, Gj, CV, DC, Dj, JC, FW, Fu, DQ, JF, HR, Ee, Ge, CZ, Hv, J1, Gq, Ib, BL, AB, Bo, DU, Jq, AU, Eq, I4, IR, Go, Fj, Cu, If, Hy, CG, Hf, GW, GR, EQ, AG, Cj, HG, GZ, El, FG, Ff, Cq, EH, IG, JL, Gz, HK, H5, EC, B4, CR, Jt, D5, EV, Cf, JQ, C4, CH, GH, Dv, F1, BU, Hp, Ca, Bv, E1, Ht, ER, IQ, Gf, Jy, AV, Eb, DF, BM, BK, JA, G5, BV, A5, Ce, HF, HC, IU, IK, E5, DW, Ek, Aa, AC, GL, Gp, Fa, De, C1, I5, Ba, BW, JP, Ak, Az, Al, B1, Bz, Ej, Ck, Gu, Ja, Ik, Bj, CW, EG, FR, HB, BP, EL, Ig, Bf, Il, Cg, Do, DG, Cp, FV, CA, CM, Ct, Jj, F6, GA, Fb, Gk, I1, Hz, Gy, GU, Av, CB, Je, Df, EW, Ae, JK, Iv, DM, Eu, E4, Cl, He, DB, Cy, FZ, H1, Gl, Hu, J6, DZ, IP, Jo, Bg, Dg, DV, Ea, JZ, Hg, FK, Gv, A6, BH, A4, D1, Hk, AR, G4, GP, AW, BR, Ju, Fv, DA, Fe, Fz, Ez, Ha, GB, I6, Hb, Ay, GF, Dl, E6, Bu, CP, JH, Hq, EM, D6, AL, Ag, HW, Ij, Eg, DH, FU, Db, Jk, AP, AQ, IZ, H4, Aj, AK, IB, Fq, CU, CL, Co, Bq, G1, DL, Au, JW, Ao, FB, IF, Du, Be, C6, BG, Ev, HA, Iq, FP, BZ, Jl, F4, IM, Dq, Jp, By, DR, Iy, Io, FL, JB, Da, Bk, IW, IA, FF, GQ, Aq, Bb, HZ, J4, EZ, Jz, Jg, Hl, HP, Fk, HM, Fy


Primary referenceThe crystallographic structure of Panicum Mosaic Virus (PMV)., Makino DL, Larson SB, McPherson A, J Struct Biol. 2012 Nov 1. pii: S1047-8477(12)00294-8. doi:, 10.1016/j.jsb.2012.10.012. PMID:23123270
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1541 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V99
  • Structure Factors (27870 Kb)
  • Retrieve 4V99 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V99 from S2C, [Save to disk]
  • View 4V99 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V99
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v99_DI] [4v99_CU] [4v99_Io] [4v99_GW] [4v99_I5] [4v99_Ha] [4v99_DP] [4v99_Cz] [4v99_Jb] [4v99_HC] [4v99_E1] [4v99_B6] [4v99_BV] [4v99_DK] [4v99_D7] [4v99_Gh] [4v99_Gz] [4v99_Cg] [4v99_Hy] [4v99_F4] [4v99_Ib] [4v99_By] [4v99_Cv] [4v99_DQ] [4v99_Da] [4v99_Hp] [4v99_Jh] [4v99_It] [4v99_DB] [4v99_Fv] [4v99_Am] [4v99_CH] [4v99_BK] [4v99_Dc] [4v99_Fm] [4v99_HV] [4v99_G1] [4v99_BW] [4v99_A4] [4v99_Jp] [4v99_BC] [4v99_Bu] [4v99_J2] [4v99_Jj] [4v99_AU] [4v99_CA] [4v99_ES] [4v99_Gw] [4v99_Hj] [4v99_CI] [4v99_Iv] [4v99_EW] [4v99_IW] [4v99_Eq] [4v99_HA] [4v99_DX] [4v99_Ca] [4v99_Ea] [4v99_Jq] [4v99_E5] [4v99_Ae] [4v99_J6] [4v99_Gr] [4v99_GH] [4v99_AQ] [4v99_HG] [4v99_Bo] [4v99_G2] [4v99_GZ] [4v99_CD] [4v99_Db] [4v99_Ev] [4v99_Iw] [4v99_Cy] [4v99_Aw] [4v99_AZ] [4v99_DZ] [4v99_AL] [4v99_Gl] [4v99_Fp] [4v99_Ee] [4v99_H4] [4v99_HU] [4v99_Do] [4v99_Fa] [4v99_Il] [4v99_Hb] [4v99_IP] [4v99_Ik] [4v99_Ey] [4v99_GD] [4v99_Hr] [4v99_Al] [4v99_CV] [4v99_Fk] [4v99_Dj] [4v99_IN] [4v99_GL] [4v99_GR] [4v99_GU] [4v99_DV] [4v99_Bf] [4v99_Hv] [4v99_Be] [4v99_Iz] [4v99_FL] [4v99_AS] [4v99_HQ] [4v99_HS] [4v99_El] [4v99_FI] [4v99_D1] [4v99_BF] [4v99_HW] [4v99_J5] [4v99_HH] [4v99_DN] [4v99_CL] [4v99_Fu] [4v99_Cq] [4v99_EV] [4v99_IV] [4v99_IL] [4v99_AD] [4v99_JQ] [4v99_Dp] [4v99_Dt] [4v99_C7] [4v99_DF] [4v99_IC] [4v99_HL] [4v99_JS] [4v99_GA] [4v99_Ct] [4v99_Cf] [4v99_Dq] [4v99_Ek] [4v99_GN] [4v99_AV] [4v99_EX] [4v99_E2] [4v99_FB] [4v99_CS] [4v99_FS] [4v99_BX] [4v99_CP] [4v99_Ba] [4v99_Ch] [4v99_FN] [4v99_H5] [4v99_Fz] [4v99_BH] [4v99_A7] [4v99_Ig] [4v99_JG] [4v99_Eu] [4v99_B7] [4v99_Cp] [4v99_BQ] [4v99_Cr] [4v99_G4] [4v99_FV] [4v99_FK] [4v99_Gc] [4v99_FX] [4v99_Jf] [4v99_Ju] [4v99_Ep] [4v99_HM] [4v99_Iu] [4v99_Ck] [4v99_Ao] [4v99_Ej] [4v99_Dv] [4v99_EF] [4v99_Ay] [4v99_Jk] [4v99_AX] [4v99_G6] [4v99_Fc] [4v99_A2] [4v99_Jg] [4v99_GV] [4v99_D4] [4v99_Dz] [4v99_E6] [4v99_EK] [4v99_Et] [4v99_I1] [4v99_A5] [4v99_Ip] [4v99_Dm] [4v99_Jy] [4v99_Bk] [4v99_D2] [4v99_Bj] [4v99_Go] [4v99_H7] [4v99_IB] [4v99_AB] [4v99_IG] [4v99_Ht] [4v99_Em] [4v99_Ic] [4v99_Ab] [4v99_IX] [4v99_JL] [4v99_BL] [4v99_Jr] [4v99_Bz] [4v99_HK] [4v99_ID] [4v99_Cm] [4v99_ED] [4v99_CC] [4v99_Jo] [4v99_EQ] [4v99_Bg] [4v99_Ap] [4v99_AK] [4v99_FU] [4v99_JW] [4v99_E4] [4v99_JA] [4v99_Cb] [4v99_GX] [4v99_Hm] [4v99_FA] [4v99_F5] [4v99_AP] [4v99_Az] [4v99_EZ] [4v99_DW] [4v99_AR] [4v99_IS] [4v99_EH] [4v99_At] [4v99_Iy] [4v99_HZ] [4v99_Ie] [4v99_D5] [4v99_Jz] [4v99_GQ] [4v99_BG] [4v99_CG] [4v99_DL] [4v99_Df] [4v99_Gv] [4v99_AC] [4v99_FF] [4v99_CW] [4v99_CX] [4v99_IM] [4v99_BP] [4v99_Dh] [4v99_IH] [4v99_JV] [4v99_BU] [4v99_Gt] [4v99_DM] [4v99_I2] [4v99_AG] [4v99_GF] [4v99_EC] [4v99_Eb] [4v99_EB] [4v99_Ah] [4v99_HD] [4v99_CR] [4v99_Cu] [4v99_Af] [4v99_FQ] [4v99_GS] [4v99_Gu] [4v99_FM] [4v99_C5] [4v99_Gf] [4v99_JZ] [4v99_EI] [4v99_AF] [4v99_Hq] [4v99_GI] [4v99_JB] [4v99_De] [4v99_Aj] [4v99_IF] [4v99_H1] [4v99_Ac] [4v99_JU] [4v99_BD] [4v99_CZ] [4v99_Dl] [4v99_Gy] [4v99_Jc] [4v99_Im] [4v99_II] [4v99_Bl] [4v99_H6] [4v99_C1] [4v99_AH] [4v99_HX] [4v99_FH] [4v99_Ez] [4v99_EP] [4v99_Hk] [4v99_Gq] [4v99_Fg] [4v99_Fh] [4v99_Fr] [4v99_Gg] [4v99_Bw] [4v99_J7] [4v99_FC] [4v99_CN] [4v99_CF] [4v99_DH] [4v99_J1] [4v99_Ag] [4v99_JH] [4v99_Aq] [4v99_I7] [4v99_Dw] [4v99_JR] [4v99_H2] [4v99_FZ] [4v99_Bp] [4v99_Bq] [4v99_Aa] [4v99_JP] [4v99_DU] [4v99_Fy] [4v99] [4v99_Jt] [4v99_G7] [4v99_Hz] [4v99_JF] [4v99_Av] [4v99_Ce] [4v99_CM] [4v99_JC] [4v99_FD] [4v99_Hl] [4v99_Bv] [4v99_HB] [4v99_B5] [4v99_CB] [4v99_Gm] [4v99_Ec] [4v99_FW] [4v99_Co] [4v99_CK] [4v99_Eo] [4v99_HR] [4v99_IQ] [4v99_Er] [4v99_EN] [4v99_Cj] [4v99_ER] [4v99_Ij] [4v99_Bh] [4v99_Bm] [4v99_Cl] [4v99_GK] [4v99_Dy] [4v99_IZ] [4v99_IA] [4v99_AN] [4v99_Jv] [4v99_Eh] [4v99_C6] [4v99_Ft] [4v99_HP] [4v99_FG] [4v99_Jm] [4v99_Du] [4v99_BB] [4v99_A1] [4v99_JI] [4v99_DG] [4v99_GM] [4v99_Jl] [4v99_Cw] [4v99_F1] [4v99_Ew] [4v99_Br] [4v99_He] [4v99_IR] [4v99_DC] [4v99_Ak] [4v99_JK] [4v99_Hf] [4v99_IU] [4v99_Je] [4v99_F7] [4v99_GP] [4v99_BN] [4v99_C4] [4v99_Eg] [4v99_CQ] [4v99_Gj] [4v99_FR] [4v99_G5] [4v99_DA] [4v99_Bc] [4v99_BZ] [4v99_BA] [4v99_HN] [4v99_DS] [4v99_Fo] [4v99_Dk] [4v99_J4] [4v99_Iq] [4v99_Bb] [4v99_Jw] [4v99_F2] [4v99_C2] [4v99_Hc] [4v99_Hw] [4v99_DD] [4v99_Fe] [4v99_BM] [4v99_F6] [4v99_Gb] [4v99_Ga] [4v99_Ge] [4v99_Gk] [4v99_E7] [4v99_Ir] [4v99_HI] [4v99_EU] [4v99_EA] [4v99_EL] [4v99_AM] [4v99_Fq] [4v99_EG] [4v99_JD] [4v99_JM] [4v99_GC] [4v99_Fl] [4v99_Ef] [4v99_B1] [4v99_Ar] [4v99_BR] [4v99_EM] [4v99_AA] [4v99_Ho] [4v99_GG] [4v99_Cc] [4v99_Au] [4v99_Ja] [4v99_Ih] [4v99_I6] [4v99_I4] [4v99_JN] [4v99_AW] [4v99_Fj] [4v99_BI] [4v99_Gp] [4v99_A6] [4v99_AI] [4v99_Fw] [4v99_B2] [4v99_BS] [4v99_JX] [4v99_Ff] [4v99_GB] [4v99_If] [4v99_Ia] [4v99_Fb] [4v99_Dg] [4v99_Bt] [4v99_Hh] [4v99_B4] [4v99_D6] [4v99_FP] [4v99_Hu] [4v99_HF] [4v99_Hg] [4v99_Dr] [4v99_IK] [4v99_DR]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4V99
  • Community annotation for 4V99 at PDBWiki (http://pdbwiki.org)

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