4V9B Crystal Structure of the 70S ribosome with tigecycline. date
authors Jenner, L., Yusupov, M., Yusupova, G.
compound source
symmetry
R_factor
R_Free 0.2688
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
note 4V9B supersedes 4G5T, 4G5U, 4G5V, 4G5W
Gene
Ontology
ChainFunctionProcessComponent
AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT


AU, CU


AX, CX


B0, D0


B1, D1


B3, D3


B4, D4


B6, D6


B7, D7


BE, DE


BF, DF


BN, DN


BO, DO


BQ, DQ


BS, DS


BT, DT


BW, DW


BX, DX


CE, AE


CF, AF


CG, AG


CJ, AJ


CK, AK


CP, AP


CQ, AQ


CR, AR


CV, AV


CW, AW


D2, B2


D5, B5


D8, B8


DD, BD


DG, BG


DH, BH


DK, BK


DM, BM


DP, BP


DR, BR


DU, BU


DV, BV


DZ, BZ


Primary referenceStructural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis., Jenner L, Starosta AL, Terry DS, Mikolajka A, Filonava L, Yusupov M, Blanchard SC, Wilson DN, Yusupova G, Proc Natl Acad Sci U S A. 2013 Feb 19. PMID:23431179
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1094 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V9B
  • Structure Factors (9001 Kb)
  • Retrieve 4V9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V9B from S2C, [Save to disk]
  • View 4V9B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V9B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v9b_DZ] [4v9b_AC] [4v9b_AJ] [4v9b_CW] [4v9b_BG] [4v9b_D7] [4v9b_D4] [4v9b_DD] [4v9b_AM] [4v9b_DQ] [4v9b_D3] [4v9b_AN] [4v9b_CV] [4v9b_BW] [4v9b_D1] [4v9b_B0] [4v9b_AX] [4v9b_CO] [4v9b_DS] [4v9b_CT] [4v9b_DE] [4v9b_CI] [4v9b_AS] [4v9b_AO] [4v9b_AP] [4v9b_CJ] [4v9b_B1] [4v9b_BD] [4v9b_BN] [4v9b_CQ] [4v9b_AD] [4v9b_CA] [4v9b_B8] [4v9b_BB] [4v9b_CK] [4v9b_AE] [4v9b_BT] [4v9b_BO] [4v9b_CD] [4v9b_DB] [4v9b_CP] [4v9b_AR] [4v9b_BV] [4v9b_DU] [4v9b_CX] [4v9b_CS] [4v9b_A1] [4v9b_CE] [4v9b_AH] [4v9b_B2] [4v9b_DF] [4v9b_BZ] [4v9b_AA] [4v9b_CC] [4v9b_DN] [4v9b_BU] [4v9b_AT] [4v9b_AL] [4v9b_B4] [4v9b_CG] [4v9b_BE] [4v9b_DH] [4v9b_BF] [4v9b_D2] [4v9b_DW] [4v9b_B6] [4v9b_DK] [4v9b_CL] [4v9b_BP] [4v9b_B7] [4v9b_BA] [4v9b_CN] [4v9b_BX] [4v9b_B5] [4v9b_D8] [4v9b_BR] [4v9b_AQ] [4v9b_DR] [4v9b_BM] [4v9b] [4v9b_DO] [4v9b_AW] [4v9b_CR] [4v9b_BH] [4v9b_AG] [4v9b_BS] [4v9b_C1] [4v9b_DT] [4v9b_D6] [4v9b_DA] [4v9b_AV] [4v9b_CF] [4v9b_DP] [4v9b_D0] [4v9b_CH] [4v9b_CM] [4v9b_B3] [4v9b_CU] [4v9b_DG] [4v9b_AK] [4v9b_DV] [4v9b_AF] [4v9b_D5] [4v9b_AU] [4v9b_BQ] [4v9b_DM] [4v9b_BK] [4v9b_AI] [4v9b_DX]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V9B: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V9B
  • Community annotation for 4V9B at PDBWiki (http://pdbwiki.org)

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