4V9C Allosteric control of the ribosome by small-molecule antibiotics date
authors Cate, J.H.D., Pulk, A., Blanchard, S.C., Wang, L., Feldman, M.B., Wasserman, M.R., Altman, R.
compound source
symmetry
R_factor
R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.30
note 4V9C supersedes 4GAQ, 4GAR, 4GAS, 4GAU
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO
  • mRNA binding involved in pos...


  • AS, CS


    AT, CT
  • ornithine decarboxylase inhi...


  • AU, CU


    B0, D0


    B1, D1


    B3, D3


    B4, D4


    BC, DC


    BE, DE


    BF, DF


    BL, DL


    BN, DN


    BO, DO


    BQ, DQ
  • translation repressor activi...


  • BS, DS


    BT, DT


    BW, DW


    BX, DX


    BY, DY


    CD, AD


    CE, AE


    CF, AF


    CG, AG


    CJ, AJ


    CK, AK


    CP, AP
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


  • CQ, AQ


    CR, AR


    CY


    D2, B2


    DD, BD


    DG, BG


    DH, BH


    DI, BI


    DJ, BJ


    DK, BK


    DM, BM


    DP, BP


    DR, BR


    DU, BU


    DV, BV


    DZ, BZ


    Primary referenceAllosteric control of the ribosome by small-molecule antibiotics., Wang L, Pulk A, Wasserman MR, Feldman MB, Altman RB, Doudna Cate JH, Blanchard SC, Nat Struct Mol Biol. 2012 Aug 19. doi: 10.1038/nsmb.2360. PMID:22902368
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1077 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V9C
  • Structure Factors (12798 Kb)
  • Retrieve 4V9C in mmCIF format [Save to disk]
  • View 4V9C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V9C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v9c_DL] [4v9c_BT] [4v9c_AV] [4v9c_DI] [4v9c_DK] [4v9c_DW] [4v9c_DP] [4v9c_B1] [4v9c_BU] [4v9c_BQ] [4v9c_CR] [4v9c_BE] [4v9c_D0] [4v9c_BO] [4v9c_CA] [4v9c_AS] [4v9c_AE] [4v9c_CU] [4v9c_DY] [4v9c_AK] [4v9c_BV] [4v9c_DV] [4v9c_CF] [4v9c_DR] [4v9c_DT] [4v9c_BJ] [4v9c_AL] [4v9c_DA] [4v9c_CM] [4v9c_AJ] [4v9c_AP] [4v9c_D3] [4v9c_CK] [4v9c_BP] [4v9c_CV] [4v9c_B0] [4v9c_DH] [4v9c_BS] [4v9c_AH] [4v9c_BA] [4v9c_DF] [4v9c_AB] [4v9c_DU] [4v9c_BK] [4v9c_CB] [4v9c_DX] [4v9c_AM] [4v9c_AT] [4v9c_DC] [4v9c_CE] [4v9c_DZ] [4v9c_AX] [4v9c_AU] [4v9c_DN] [4v9c_CT] [4v9c_AR] [4v9c_BN] [4v9c_AO] [4v9c_AI] [4v9c_BH] [4v9c_AC] [4v9c_D1] [4v9c_CY] [4v9c_AA] [4v9c_AF] [4v9c_CJ] [4v9c_CC] [4v9c_CO] [4v9c_BD] [4v9c_CL] [4v9c_BI] [4v9c_B3] [4v9c_CQ] [4v9c_DG] [4v9c_BC] [4v9c_CH] [4v9c_DO] [4v9c_CD] [4v9c_DB] [4v9c_BW] [4v9c_BZ] [4v9c_DE] [4v9c_BM] [4v9c_BF] [4v9c_DS] [4v9c_BB] [4v9c_BR] [4v9c_BY] [4v9c_DM] [4v9c_BG] [4v9c_B2] [4v9c_CX] [4v9c_D4] [4v9c_CN] [4v9c_DJ] [4v9c_AQ] [4v9c] [4v9c_CI] [4v9c_AD] [4v9c_CS] [4v9c_DD] [4v9c_AN] [4v9c_CG] [4v9c_BX] [4v9c_DQ] [4v9c_CP] [4v9c_AG] [4v9c_D2] [4v9c_BL] [4v9c_B4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V9C: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V9C
  • Community annotation for 4V9C at PDBWiki (http://pdbwiki.org)

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