4B9M Structure of the high fidelity DNA polymerase I with an oxidative formamidopyrimidine-dA DNA lesion -thymine basepair in the post- insertion site. date
authors Gehrke, T.H., Lischke, U., Arnold, S., Schneider, S., Carell, T.
compound source
symmetry
R_factor
R_Free 0.22098
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand FAX, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity


  • Primary referenceUnexpected non-Hoogsteen-based mutagenicity mechanism of FaPy-DNA lesions., Gehrke TH, Lischke U, Gasteiger KL, Schneider S, Arnold S, Muller HC, Stephenson DS, Zipse H, Carell T, Nat Chem Biol. 2013 May 19. doi: 10.1038/nchembio.1254. PMID:23685671
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (4b9m.pdb1.gz) 220 Kb
  • LPC: Ligand-Protein Contacts for 4B9M
  • CSU: Contacts of Structural Units for 4B9M
  • Structure Factors (366 Kb)
  • Retrieve 4B9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B9M from S2C, [Save to disk]
  • Re-refined 4b9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4B9M, from MSDmotif at EBI
  • Fold representative 4b9m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b9m_C] [4b9m_A] [4b9m] [4b9m_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4B9M: [35EXOc] [POLAc ] by SMART
  • Other resources with information on 4B9M
  • Community annotation for 4B9M at PDBWiki (http://pdbwiki.org)

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