4D1Q Hermes transposase bound to its terminal inverted repeat date
authors Hickman, A.B., Ewis, H., Li, X., Knapp, J., Laver, T., Doss, A.L., Tolun, G., Steven, A., Grishaev, A., Bax, A., Atkinson, P., Craig, N.L., Dyda, F.
compound source
R_Free 0.2543
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
ligand NA enzyme
H, A, G, B

Primary referenceStructural Basis of hAT Transposon End Recognition by Hermes, an Octameric DNA Transposase from Musca domestica., Hickman AB, Ewis HE, Li X, Knapp JA, Laver T, Doss AL, Tolun G, Steven AC, Grishaev A, Bax A, Atkinson PW, Craig NL, Dyda F, Cell. 2014 Jul 17;158(2):353-67. doi: 10.1016/j.cell.2014.05.037. PMID:25036632
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (387 Kb) [Save to disk]
  • Biological Unit Coordinates (4d1q.pdb1.gz) 756 Kb
  • LPC: Ligand-Protein Contacts for 4D1Q
  • CSU: Contacts of Structural Units for 4D1Q
  • Structure Factors (839 Kb)
  • Retrieve 4D1Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D1Q from S2C, [Save to disk]
  • Re-refined 4d1q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4D1Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4D1Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D1Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d1q_A] [4d1q_I] [4d1q_J] [4d1q_C] [4d1q_D] [4d1q_H] [4d1q_G] [4d1q_L] [4d1q] [4d1q_K] [4d1q_B] [4d1q_E] [4d1q_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4D1Q
  • Community annotation for 4D1Q at PDBWiki (http://pdbwiki.org)

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