4EOH Crystal Structure of Human PL Kinase with bound Theophylline date 2012-04-14
authors Safo, M.K., Gandhi, A.K., Musayev, F.N.
compound source
symmetry
R_factor
R_Free 0.2540
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand MPD, NA, SO4, TEP enzyme
note 4EOH supersedes 3KBI
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • pyridoxal kinase activity


  • Primary referenceCrystal structures of human pyridoxal kinase in complex with the neurotoxins, ginkgotoxin and theophylline: insights into pyridoxal kinase inhibition., Gandhi AK, Desai JV, Ghatge MS, di Salvo ML, Di Biase S, Danso-Danquah R, Musayev FN, Contestabile R, Schirch V, Safo MK, PLoS One. 2012;7(7):e40954. Epub 2012 Jul 18. PMID:22879864
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (4eoh.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 4EOH
  • CSU: Contacts of Structural Units for 4EOH
  • Structure Factors (921 Kb)
  • Retrieve 4EOH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EOH from S2C, [Save to disk]
  • Re-refined 4eoh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EOH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EOH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EOH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eoh_A] [4eoh] [4eoh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4EOH
  • Community annotation for 4EOH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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