4FEU Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor anthrapyrazolone SP600125 date 2012-05-30
authors Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Leo, R.Di., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., CSGID, Center.for.Structural.Genomics.of.Infectious.Diseases.
compound source
symmetry
R_factor
R_Free 0.2146
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.37
ligand 537, ACT, KAN, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructure-guided optimization of protein kinase inhibitors reverses aminoglycoside antibiotic resistance., Stogios PJ, Spanogiannopoulos P, Evdokimova E, Egorova O, Shakya T, Todorovic N, Capretta A, Wright GD, Savchenko A, Biochem J. 2013 Jun 12. PMID:23758273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk]
  • Biological Unit Coordinates (4feu.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (4feu.pdb2.gz) 95 Kb
  • Biological Unit Coordinates (4feu.pdb3.gz) 95 Kb
  • Biological Unit Coordinates (4feu.pdb4.gz) 88 Kb
  • Biological Unit Coordinates (4feu.pdb5.gz) 95 Kb
  • Biological Unit Coordinates (4feu.pdb6.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4FEU
  • CSU: Contacts of Structural Units for 4FEU
  • Structure Factors (1305 Kb)
  • Retrieve 4FEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FEU from S2C, [Save to disk]
  • Re-refined 4feu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FEU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FEU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4feu_E] [4feu_F] [4feu] [4feu_C] [4feu_A] [4feu_B] [4feu_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FEU
  • Community annotation for 4FEU at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science