4I9B Structure of aminoaldehyde dehydrogenase 1 from Solanum lycopersium (SlAMADH1) with a thiohemiacetal intermediate date 2012-12-05
authors Morera, S., Vigouroux, A., Kopecny, D.
compound source
symmetry
R_factor
R_Free 0.2119
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 1KA, EDO, NA, NAD, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePlant ALDH10 family: identifying critical residues for substrate specificity and trapping a thiohemiacetal intermediate., Kopecny D, Koncitikova R, Tylichova M, Vigouroux A, Moskalikova H, Soural M, Sebela M, Morera S, J Biol Chem. 2013 Mar 29;288(13):9491-507. doi: 10.1074/jbc.M112.443952. Epub, 2013 Feb 13. PMID:23408433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (4i9b.pdb1.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 4I9B
  • CSU: Contacts of Structural Units for 4I9B
  • Structure Factors (425 Kb)
  • Retrieve 4I9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I9B from S2C, [Save to disk]
  • Re-refined 4i9b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I9B in 3D
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  • Visual 3D analysis of 4I9B
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4I9B, from MSDmotif at EBI
  • Fold representative 4i9b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i9b_B] [4i9b_A] [4i9b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4I9B
  • Community annotation for 4I9B at PDBWiki (http://pdbwiki.org)

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