4P3O Structural Basis for Full-Spectrum Inhibition of Threonyl-tRNA Synthetase by Borrelidin 2 date
authors Fang, P., Yu, X., Chen, K., Chen, X., Guo, M.
compound source
symmetry
R_factor
R_Free 0.2237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 2CR, GOL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for full-spectrum inhibition of translational functions on a tRNA synthetase., Fang P, Yu X, Jeong SJ, Mirando A, Chen K, Chen X, Kim S, Francklyn CS, Guo M, Nat Commun. 2015 Mar 31;6:6402. doi: 10.1038/ncomms7402. PMID:25824639
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (4p3o.pdb1.gz) 275 Kb
  • LPC: Ligand-Protein Contacts for 4P3O
  • CSU: Contacts of Structural Units for 4P3O
  • Structure Factors (622 Kb)
  • Retrieve 4P3O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P3O from S2C, [Save to disk]
  • Re-refined 4p3o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P3O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P3O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P3O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p3o_B] [4p3o] [4p3o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4P3O
  • Community annotation for 4P3O at PDBWiki (http://pdbwiki.org)

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