4WO5 Transferase Transferase Inhibitor date Oct 15, 2014
title Crystal Structure Of A Braf Kinase Domain Monomer
authors D.A.Critton
compound source
Molecule: Serinethreonine-Protein Kinase B-Raf
Chain: A, B
Fragment: Unp Residues 444-723
Synonym: Proto-Oncogene B-Raf,P94,V-Raf Murine Sarcoma Vira Homolog B1;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Braf, Braf1, Rafb1
Expression_system: Escherichia Coli
Expression_system_taxid: 668369
Expression_system_strain: Dh5[Alpha]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: I 2 2 2
R_factor 0.193 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.610 72.748 243.338 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.83 Å
ligand 324 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a BRAF kinase domain monomer explains basis for allosteric regulation., Thevakumaran N, Lavoie H, Critton DA, Tebben A, Marinier A, Sicheri F, Therrien M, Nat Struct Mol Biol. 2014 Dec 1. doi: 10.1038/nsmb.2924. PMID:25437913
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (4wo5.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (4wo5.pdb2.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 4WO5
  • CSU: Contacts of Structural Units for 4WO5
  • Structure Factors (355 Kb)
  • Retrieve 4WO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WO5 from S2C, [Save to disk]
  • Re-refined 4wo5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WO5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4WO5, from MSDmotif at EBI
  • Fold representative 4wo5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wo5_B] [4wo5] [4wo5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WO5: [STYKc ] by SMART
  • Other resources with information on 4WO5
  • Community annotation for 4WO5 at PDBWiki (http://pdbwiki.org)

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