4Y7U Structural analysis of MurU date
authors Renner-Schneck, M.G., Stehle, T.
compound source
symmetry
R_factor
R_Free 0.2640
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 2KH, 491, GOL, MG, SO4 enzyme
Gene PPUBIRD1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the N-acetylmuramic acid alpha-1-phosphate (MurNAc-alpha1P) uridylytransferase MurU, a minimal sugar-nucleotidyltransferase and potential drug target enzyme in Gram-negative pathogens., Renner-Schneck M, Hinderberger I, Gisin J, Exner T, Mayer C, Stehle T, J Biol Chem. 2015 Mar 12. pii: jbc.M114.620989. PMID:25767118
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4y7u.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 4Y7U
  • CSU: Contacts of Structural Units for 4Y7U
  • Structure Factors (243 Kb)
  • Retrieve 4Y7U in mmCIF format [Save to disk]
  • Re-refined 4y7u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y7U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y7U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Y7U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y7u] [4y7u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Y7U
  • Community annotation for 4Y7U at PDBWiki (http://pdbwiki.org)

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