4YVP Crystal Structure of AKR1C1 complexed with glibenclamide date
authors Zhao, Y., Zheng, X., Zhang, H., Hu, X.
compound source
R_Free 0.24724
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand GBM, NAP enzyme
A, B

Primary referenceIn vitro inhibition of AKR1Cs by sulphonylureas and the structural basis., Zhao Y, Zheng X, Zhang H, Zhai J, Zhang L, Li C, Zeng K, Chen Y, Li Q, Hu X, Chem Biol Interact. 2015 Oct 5;240:310-5. doi: 10.1016/j.cbi.2015.09.006. Epub, 2015 Sep 8. PMID:26362498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (4yvp.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (4yvp.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4YVP
  • CSU: Contacts of Structural Units for 4YVP
  • Structure Factors (418 Kb)
  • Retrieve 4YVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YVP from S2C, [Save to disk]
  • Re-refined 4yvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YVP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4yvp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yvp_B] [4yvp_A] [4yvp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4YVP
  • Community annotation for 4YVP at PDBWiki (http://pdbwiki.org)

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