5AFI 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM date
authors Fischer, N., Neumann, P., Konevega, A.L., Bock, L.V., Ficner, R., Rodnina, M.V., Stark, H.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3


4


5


6


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q
  • translation repressor activi...


    • R


    S


    T


    U


    V


    W


    X


    Y


    Z


    b


    c


    d


    e


    f


    g


    h


    i


    j


    k


    l


    m


    n


    o
  • mRNA binding involved in pos...


    • p
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


    • q


    r


    s


    t
  • ornithine decarboxylase inhi...


    • u


    z


    Primary referenceStructure of the E. coli ribosome-EF-Tu complex at <3 A resolution by C-corrected cryo-EM., Fischer N, Neumann P, Konevega AL, Bock LV, Ficner R, Rodnina MV, Stark H, Nature. 2015 Feb 23. doi: 10.1038/nature14275. PMID:25707802
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2418 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5AFI
  • Retrieve 5AFI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AFI from S2C, [Save to disk]
    • View 5AFI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AFI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5afi_w] [5afi_u] [5afi_r] [5afi_V] [5afi_d] [5afi_b] [5afi_i] [5afi_X] [5afi_H] [5afi_E] [5afi_O] [5afi_M] [5afi_a] [5afi_Q] [5afi_K] [5afi_c] [5afi_o] [5afi_l] [5afi_R] [5afi_G] [5afi_j] [5afi_T] [5afi_3] [5afi_S] [5afi_m] [5afi_N] [5afi_v] [5afi_U] [5afi_f] [5afi_6] [5afi_k] [5afi] [5afi_x] [5afi_L] [5afi_I] [5afi_p] [5afi_g] [5afi_s] [5afi_n] [5afi_h] [5afi_A] [5afi_Z] [5afi_Y] [5afi_t] [5afi_P] [5afi_B] [5afi_4] [5afi_e] [5afi_F] [5afi_D] [5afi_5] [5afi_2] [5afi_q] [5afi_y] [5afi_J] [5afi_1] [5afi_C] [5afi_0] [5afi_W] [5afi_z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5AFI: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 5AFI
  • Community annotation for 5AFI at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science