5AJ0 Ribosome date 5-0 20, 1999
authors E.Behrmann, J.Loerke, T.V.Budkevich, K.Yamamoto, A.Schmidt, P.A.Penczek, M.R.Vos, J.Burger, T.Mielke, P.Scheerer, C.M.T
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
AA


AB


AC


AD


AE


AF


AG


AH


AI

  • cytosolic large ribosomal su...
  • AJ


    AK


    AL


    AM


    AN


    AO


    AP


    AQ


    AR


    AS


    AT


    AU


    AV


    AW


    AX


    AY


    AZ


    Aa


    Ab


    Ac


    Ad


    Ae


    Af


    Ag


    Ah


    Ai


    Aj


    Ak


    Al, An


    Am


    Ao

  • cytosolic large ribosomal su...
  • Ap


    Aq


    At


    Au


    BA

  • cytosolic small ribosomal su...
  • BB

  • cytosolic small ribosomal su...
  • BC

  • cytosolic small ribosomal su...
  • BD

  • cytosolic small ribosomal su...
  • BE


    BF

  • cytosolic small ribosomal su...
  • BG

  • cytosolic small ribosomal su...
  • BH

  • cytosolic small ribosomal su...
  • BI

  • cytosolic small ribosomal su...
  • BJ

  • cytosolic small ribosomal su...
  • BK

  • cytosolic small ribosomal su...
  • BL

  • cytosolic small ribosomal su...
  • BM

  • cytosolic small ribosomal su...
  • BN

  • cytosolic small ribosomal su...
  • BO

  • cytosolic small ribosomal su...
  • BP

  • cytosolic small ribosomal su...
  • BQ

  • cytosolic small ribosomal su...
  • BR

  • cytosolic small ribosomal su...
  • BS

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • BT

  • cytosolic small ribosomal su...
  • BU

  • cytosolic small ribosomal su...
  • BV

  • cytosolic small ribosomal su...
  • BW

  • cytosolic small ribosomal su...
  • BX

  • cytosolic small ribosomal su...
  • BY

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • BZ

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Ba

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Bb

  • cytosolic small ribosomal su...
  • Bc

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Bd

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Be

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Bf

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Bg


    Primary referenceStructural snapshots of actively translating human ribosomes., Behrmann E, Loerke J, Budkevich TV, Yamamoto K, Schmidt A, Penczek PA, Vos MR, Burger J, Mielke T, Scheerer P, Spahn CM, Cell. 2015 May 7;161(4):845-57. doi: 10.1016/j.cell.2015.03.052. PMID:25957688
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1051 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5AJ0
  • Retrieve 5AJ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AJ0 from S2C, [Save to disk]
  • View 5AJ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AJ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5aj0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aj0_Aa] [5aj0_AE] [5aj0_A4] [5aj0_Bc] [5aj0_BB] [5aj0_BU] [5aj0_Ag] [5aj0_An] [5aj0_Ae] [5aj0_BS] [5aj0_BK] [5aj0_BY] [5aj0_Al] [5aj0_BT] [5aj0_BL] [5aj0_BQ] [5aj0_By] [5aj0_Au] [5aj0_Aj] [5aj0_BI] [5aj0_AT] [5aj0_AS] [5aj0_AH] [5aj0_Bd] [5aj0_BX] [5aj0_AJ] [5aj0_AU] [5aj0_BA] [5aj0_BO] [5aj0_AK] [5aj0_AN] [5aj0_AL] [5aj0_Ah] [5aj0_BM] [5aj0_BG] [5aj0_AZ] [5aj0_Ba] [5aj0_AO] [5aj0_BE] [5aj0_Ab] [5aj0] [5aj0_BZ] [5aj0_A3] [5aj0_Ak] [5aj0_AA] [5aj0_AC] [5aj0_AV] [5aj0_BP] [5aj0_AF] [5aj0_BH] [5aj0_BJ] [5aj0_Bg] [5aj0_AP] [5aj0_Bf] [5aj0_BV] [5aj0_AY] [5aj0_A2] [5aj0_Bw] [5aj0_AI] [5aj0_Am] [5aj0_Ad] [5aj0_BR] [5aj0_BD] [5aj0_AQ] [5aj0_BN] [5aj0_BF] [5aj0_Bx] [5aj0_AG] [5aj0_Be] [5aj0_Ai] [5aj0_AX] [5aj0_Ac] [5aj0_BW] [5aj0_BC] [5aj0_AB] [5aj0_AM] [5aj0_At] [5aj0_Bv] [5aj0_Bb] [5aj0_Ap] [5aj0_Ao] [5aj0_AD] [5aj0_AW] [5aj0_Af] [5aj0_Aq] [5aj0_AR] [5aj0_B1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5AJ0: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [TRASH] [UBQ] [WD40 ] by SMART
  • Other resources with information on 5AJ0
  • Community annotation for 5AJ0 at PDBWiki (http://pdbwiki.org)

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