5AJ0
Cryo electron microscopy of actively translating human polysomes (POST state).
date
authors
Behrmann, E., Loerke, J., Budkevich, T.V., Yamamoto, K., Schmidt, A., Penczek, P.A., Vos, M.R., Burger, J., Mielke, T., Scheerer, P., Spahn, C.M.T.
compound
source
symmetry
R_factor
R_Free
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
3.50
Gene
Ontology
Chain
Function
Process
Component
AA
AB
AC
AD
AE
AF
AG
AH
AI
cytosolic large ribosomal su...
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
AY
AZ
Aa
Ab
Ac
Ad
Ae
Af
Ag
Ah
Ai
Aj
Ak
Al
Am
intracellular transport of v...
An
Ao
cytosolic large ribosomal su...
Ap
Aq
At
Au
BA
virus receptor activity
cytosolic small ribosomal su...
BB
cytosolic small ribosomal su...
BC
cytosolic small ribosomal su...
BD
cytosolic small ribosomal su...
BE
BF
cytosolic small ribosomal su...
BG
cytosolic small ribosomal su...
BH
cytosolic small ribosomal su...
BI
cytosolic small ribosomal su...
BJ
cytosolic small ribosomal su...
BK
cytosolic small ribosomal su...
BL
cytosolic small ribosomal su...
BM
cytosolic small ribosomal su...
BN
cytosolic small ribosomal su...
BO
translation regulator activi...
cytosolic small ribosomal su...
BP
cytosolic small ribosomal su...
BQ
cytosolic small ribosomal su...
BR
cytosolic small ribosomal su...
BS
small ribosomal subunit
cytosolic small ribosomal su...
BT
cytosolic small ribosomal su...
BU
cytosolic small ribosomal su...
BV
cytosolic small ribosomal su...
BW
cytosolic small ribosomal su...
BX
cytosolic small ribosomal su...
BY
small ribosomal subunit
cytosolic small ribosomal su...
BZ
small ribosomal subunit
cytosolic small ribosomal su...
Ba
small ribosomal subunit
cytosolic small ribosomal su...
Bb
cytosolic small ribosomal su...
Bc
small ribosomal subunit
cytosolic small ribosomal su...
Bd
small ribosomal subunit
cytosolic small ribosomal su...
Be
small ribosomal subunit
cytosolic small ribosomal su...
Bf
intracellular transport of v...
small ribosomal subunit
cytosolic small ribosomal su...
Bg
protein tyrosine kinase inhi...
Primary reference
Structural snapshots of actively translating human ribosomes., Behrmann E, Loerke J, Budkevich TV, Yamamoto K, Schmidt A, Penczek PA, Vos MR, Burger J, Mielke T, Scheerer P, Spahn CM, Cell. 2015 May 7;161(4):845-57. doi: 10.1016/j.cell.2015.03.052. PMID:
25957688
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(1051 Kb)
[Save to disk]
CSU:
Contacts of Structural Units
for 5AJ0
Retrieve 5AJ0 in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5AJ0
from
S2C
,
[Save to disk]
View 5AJ0 in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5AJ0
Ramachandran
plot from
PDBSum
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5aj0_Aa]
[5aj0_AE]
[5aj0_A4]
[5aj0_Bc]
[5aj0_BB]
[5aj0_BU]
[5aj0_Ag]
[5aj0_An]
[5aj0_Ae]
[5aj0_BS]
[5aj0_BK]
[5aj0_BY]
[5aj0_Al]
[5aj0_BT]
[5aj0_BL]
[5aj0_BQ]
[5aj0_By]
[5aj0_Au]
[5aj0_Aj]
[5aj0_BI]
[5aj0_AT]
[5aj0_AS]
[5aj0_AH]
[5aj0_Bd]
[5aj0_BX]
[5aj0_AJ]
[5aj0_AU]
[5aj0_BA]
[5aj0_BO]
[5aj0_AK]
[5aj0_AN]
[5aj0_AL]
[5aj0_Ah]
[5aj0_BM]
[5aj0_BG]
[5aj0_AZ]
[5aj0_Ba]
[5aj0_AO]
[5aj0_BE]
[5aj0_Ab]
[5aj0]
[5aj0_BZ]
[5aj0_A3]
[5aj0_Ak]
[5aj0_AA]
[5aj0_AC]
[5aj0_AV]
[5aj0_BP]
[5aj0_AF]
[5aj0_BH]
[5aj0_BJ]
[5aj0_Bg]
[5aj0_AP]
[5aj0_Bf]
[5aj0_BV]
[5aj0_AY]
[5aj0_A2]
[5aj0_Bw]
[5aj0_AI]
[5aj0_Am]
[5aj0_Ad]
[5aj0_BR]
[5aj0_BD]
[5aj0_AQ]
[5aj0_BN]
[5aj0_BF]
[5aj0_Bx]
[5aj0_AG]
[5aj0_Be]
[5aj0_Ai]
[5aj0_AX]
[5aj0_Ac]
[5aj0_BW]
[5aj0_BC]
[5aj0_AB]
[5aj0_AM]
[5aj0_At]
[5aj0_Bv]
[5aj0_Bb]
[5aj0_Ap]
[5aj0_Ao]
[5aj0_AD]
[5aj0_AW]
[5aj0_Af]
[5aj0_Aq]
[5aj0_AR]
[5aj0_B1]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domains
found in 5AJ0:
[KH]
[KOW]
[RL11]
[Ribosomal_L14]
[Ribosomal_L15e]
[Ribosomal_L19e]
[Ribosomal_L2]
[Ribosomal_L2_C]
[Ribosomal_L31e]
[Ribosomal_L32e]
[Ribosomal_L40e]
[Ribosomal_S10]
[Ribosomal_S13_N]
[Ribosomal_S15]
[Ribosomal_S19e]
[Ribosomal_S27]
[Ribosomal_S3Ae]
[Ribosomal_S4]
[Ribosomal_S6e]
[S4]
[TRASH]
[UBQ]
[WD40 ]
by
SMART
Other resources with information on 5AJ0
Community annotation for
5AJ0
at
PDBWiki
(http://pdbwiki.org)
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