5C9C	Transferase Transferase Inhibitor	date	Jun 26, 2015
title	Crystal Structure Of Braf(V600e) In Complex With Ly3009120 C
authors	T.Edwards, J.Abendroth, L.Chun
compound		source
Molecule: Serinethreonine-Protein Kinase B-Raf Chain: A, B Fragment: Unp Residues 432-726 Synonym: Proto-Oncogene B-Raf,P94,V-Raf Murine Sarcoma Vira Homolog B1; Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
symmetry	Space Group: P 41 21 2	R_factor 0.194 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.880 93.880 165.550 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	4Z5, CL	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Inhibition of RAF Isoforms and Active Dimers by LY3009120 Leads to Anti-tumor Activities in RAS or BRAF Mutant Cancers., Peng SB, Henry JR, Kaufman MD, Lu WP, Smith BD, Vogeti S, Rutkoski TJ, Wise S, Chun L, Zhang Y, Van Horn RD, Yin T, Zhang X, Yadav V, Chen SH, Gong X, Ma X, Webster Y, Buchanan S, Mochalkin I, Huber L, Kays L, Donoho GP, Walgren J, McCann D, Patel P, Conti I, Plowman GD, Starling JJ, Flynn DL, Cancer Cell. 2015 Sep 14;28(3):384-98. doi: 10.1016/j.ccell.2015.08.002. Epub, 2015 Sep 3. PMID:26343583

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (5c9c.pdb1.gz) 44 Kb Biological Unit Coordinates (5c9c.pdb2.gz) 42 Kb Biological Unit Coordinates (5c9c.pdb3.gz) 83 Kb LPC: Ligand-Protein Contacts for 5C9C CSU: Contacts of Structural Units for 5C9C Structure Factors (385 Kb) Retrieve 5C9C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5C9C from S2C, [Save to disk] Re-refined 5c9c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5C9C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5C9C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5c9c_B] [5c9c_A] [5c9c] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5C9C: [STYKc ] by SMART

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