OCA Atlas for 5D80

5D80

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, b, B, C, a, c
F, e, d, E, D, f
G, g	ATPase activity, coupled to ... proton-transporting ATPase a...
H, h
j, N, L, n, l, J
k, M, K, I, i, m
o, O

Primary reference

Crystal structure of yeast V1-ATPase in the autoinhibited state., Oot RA, Kane PM, Berry EA, Wilkens S, EMBO J. 2016 Jun 13. pii: e201593447. PMID:27295975

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1016 Kb) [Save to disk]

Biological Unit Coordinates (5d80.pdb1.gz) 494 Kb

Biological Unit Coordinates (5d80.pdb2.gz) 490 Kb

CSU: Contacts of Structural Units for 5D80

Structure Factors (351 Kb)

Retrieve 5D80 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5D80 from S2C, [Save to disk]

Re-refined 5d80 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D80 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d80] [5d80_A] [5d80_B] [5d80_C] [5d80_D] [5d80_E] [5d80_F] [5d80_G] [5d80_H] [5d80_I] [5d80_J] [5d80_K] [5d80_L] [5d80_M] [5d80_N] [5d80_O] [5d80_a] [5d80_b] [5d80_c] [5d80_d] [5d80_e] [5d80_f] [5d80_g] [5d80_h] [5d80_i] [5d80_j] [5d80_k] [5d80_l] [5d80_m] [5d80_n] [5d80_o]

SWISS-PROT database:

Domain found in 5D80: [AAA ] by SMART

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