5DC3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
C0


C1, c1

  • cytosolic small ribosomal su...
  • C2, c2

  • cytosolic small ribosomal su...
  • C5, c5


    C7, c7


    C8, c8


    D1, d1

  • cytosolic small ribosomal su...
  • D2, d2

  • cytosolic small ribosomal su...
  • D7, d7

  • cytosolic small ribosomal su...
  • L2, l2


    L5, l5

  • cytosolic large ribosomal su...
  • L6, l6


    L9, l9


    M0, m0

  • cytosolic large ribosomal su...
  • M1, m1

  • cytosolic large ribosomal su...
  • M3, m3

  • cytosolic large ribosomal su...
  • M5, m5


    M6, m6

  • cytosolic large ribosomal su...
  • M8, m8

  • cytosolic large ribosomal su...
  • M9, m9

  • cytosolic large ribosomal su...
  • N0, n0

  • cytosolic large ribosomal su...
  • N3, n3

  • cytosolic large ribosomal su...
  • N5, n5

  • cytosolic large ribosomal su...
  • N6, n6


    O1, o1


    O4, o4

  • preribosome, large subunit p...
  • O7, o7

  • cytosolic large ribosomal su...
  • O8, o8

  • cytosolic large ribosomal su...
  • O9, o9

  • cytosolic large ribosomal su...
  • Q3, q3

  • cytosolic large ribosomal su...
  • S0, s0


    S3, s3

  • cytosolic small ribosomal su...
  • S4, s4

  • cytosolic small ribosomal su...
  • S7, s7


    S9, s9

  • cytosolic small ribosomal su...
  • SR, sR
  • GDP-dissociation inhibitor a...


  • c3, C3

  • cytosolic small ribosomal su...
  • c4, C4


    c6, C6


    c9, C9

  • cytosolic small ribosomal su...
  • d0, D0

  • cytosolic small ribosomal su...
  • d3, D3


    d4, D4


    d5, D5

  • cytosolic small ribosomal su...
  • d6, D6


    d8, D8

  • cytosolic small ribosomal su...
  • d9, D9

  • cytosolic small ribosomal su...
  • e0, E0


    e1, E1


    f
  • translation initiation facto...


  • l3, L3

  • cytosolic large ribosomal su...
  • l4, L4

  • cytosolic large ribosomal su...
  • l7, L7


    l8, L8

  • cytosolic large ribosomal su...
  • m4, M4

  • cytosolic large ribosomal su...
  • m7, M7


    n1, N1

  • cytosolic large ribosomal su...
  • n2, N2


    n4, N4

  • cytosolic large ribosomal su...
  • n7, N7

  • cytosolic large ribosomal su...
  • n8, N8

  • cytosolic large ribosomal su...
  • n9, N9


    o0, O0

  • cytosolic large ribosomal su...
  • o2, O2

  • cytosolic large ribosomal su...
  • o3, O3


    o5, O5

  • cytosolic large ribosomal su...
  • o6, O6


    p0


    q0, Q0


    q1, Q1


    q2, Q2

  • cytosolic large ribosomal su...
  • s1, S1


    s2, S2


    s5, S5

  • cytosolic small ribosomal su...
  • s6, S6

  • cytosolic small ribosomal su...
  • s8, S8

  • cytosolic small ribosomal su...
  • sM, SM


    Primary referenceCrystal structure of hypusine-containing translation factor eIF5A bound to a rotated eukaryotic ribosome., Melnikov S, Mailliot J, Shin BS, Rigger L, Yusupova G, Micura R, Dever TE, Yusupov M, J Mol Biol. 2016 May 16. pii: S0022-2836(16)30154-1. doi:, 10.1016/j.jmb.2016.05.011. PMID:27196944
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] () [Save to disk]
  • CSU: Contacts of Structural Units for 5DC3
  • Structure Factors (12692 Kb)
  • Retrieve 5DC3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DC3 from S2C, [Save to disk]
  • View 5DC3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DC3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dc3_o3] [5dc3_l2] [5dc3_N7] [5dc3_S7] [5dc3_S0] [5dc3_e0] [5dc3_l9] [5dc3_m4] [5dc3_Q2] [5dc3_S4] [5dc3_o9] [5dc3_l7] [5dc3_C6] [5dc3_C5] [5dc3_N4] [5dc3_n2] [5dc3_N9] [5dc3_D4] [5dc3_O6] [5dc3_S6] [5dc3_D9] [5dc3_D6] [5dc3_E0] [5dc3_d2] [5dc3_c1] [5dc3_s6] [5dc3_q0] [5dc3_n0] [5dc3_n4] [5dc3_q3] [5dc3_l8] [5dc3_m9] [5dc3_Q1] [5dc3_l6] [5dc3_O4] [5dc3_s2] [5dc3_c0] [5dc3_d3] [5dc3_s0] [5dc3_C7] [5dc3_1] [5dc3_s3] [5dc3_m5] [5dc3_SR] [5dc3_N8] [5dc3_D0] [5dc3_L6] [5dc3_D2] [5dc3_m1] [5dc3_D1] [5dc3_p2] [5dc3_Q0] [5dc3_M0] [5dc3_n7] [5dc3_8] [5dc3_C3] [5dc3_f] [5dc3_L5] [5dc3_q1] [5dc3_O8] [5dc3_n9] [5dc3_S8] [5dc3_c2] [5dc3_N0] [5dc3_L4] [5dc3_o1] [5dc3_n3] [5dc3_c9] [5dc3_L2] [5dc3_o8] [5dc3_c6] [5dc3_sR] [5dc3_d1] [5dc3_5] [5dc3_O0] [5dc3_e1] [5dc3_s1] [5dc3_L7] [5dc3_O7] [5dc3_n5] [5dc3_o7] [5dc3_M5] [5dc3_S3] [5dc3_C8] [5dc3_C0] [5dc3_m7] [5dc3_s8] [5dc3_D7] [5dc3_S2] [5dc3_D8] [5dc3_C4] [5dc3_M4] [5dc3_n6] [5dc3_sM] [5dc3_C2] [5dc3_d5] [5dc3_s5] [5dc3_O1] [5dc3_O9] [5dc3_q2] [5dc3_n1] [5dc3_o6] [5dc3_d9] [5dc3_d0] [5dc3_p1] [5dc3_m3] [5dc3_D3] [5dc3_d8] [5dc3_o2] [5dc3_M7] [5dc3_S9] [5dc3_N2] [5dc3_m6] [5dc3_m8] [5dc3_4] [5dc3_M1] [5dc3_S1] [5dc3_o0] [5dc3_O2] [5dc3_6] [5dc3_N5] [5dc3_O3] [5dc3_L8] [5dc3_c3] [5dc3_l3] [5dc3_3] [5dc3_N6] [5dc3_n8] [5dc3_L9] [5dc3_d6] [5dc3_2] [5dc3_Q3] [5dc3_M8] [5dc3_M3] [5dc3_d7] [5dc3_l5] [5dc3_c5] [5dc3_S5] [5dc3_s4] [5dc3_s7] [5dc3_o4] [5dc3_o5] [5dc3_d4] [5dc3_p0] [5dc3_L3] [5dc3_m0] [5dc3_l4] [5dc3] [5dc3_O5] [5dc3_N1] [5dc3_c7] [5dc3_c4] [5dc3_M6] [5dc3_c8] [5dc3_N3] [5dc3_s9] [5dc3_C9] [5dc3_7] [5dc3_m2] [5dc3_C1] [5dc3_E1] [5dc3_D5] [5dc3_M9] [5dc3_SM]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5DC3: [HABP4_PAI-RBP1] [KH] [KOW] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [WD40] [eIF-5a ] by SMART
  • Other resources with information on 5DC3
  • Community annotation for 5DC3 at PDBWiki (http://pdbwiki.org)

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