5DFE		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component QH, XH QO, XO QP, XP QQ, XQ QR, XR QT, XT R0, Y0 R1, Y1 R2, Y2 R3, Y3 R4, Y4 R5, Y5 R8, Y8 R9, Y9 RE, YE RF, YF RN, YN RP, YP RQ, YQ RS, YS RW, YW RX, YX XB, QB XC, QC XD, QD XE, QE XF, QF XG, QG XI, QI XJ, QJ XK, QK XL, QL XM, QM XN, QN XS, QS XU, QU XY, QY Y6, R6 Y7, R7 YD, RD YG, RG YH, RH YI, RI YO, RO YR, RR YT, RT YU, RU YV, RV YY, RY YZ, RZ
Primary reference	Uniformity of Peptide Release Is Maintained by Methylation of Release Factors., Pierson WE, Hoffer ED, Keedy HE, Simms CL, Dunham CM, Zaher HS, Cell Rep. 2016 Sep 27;17(1):11-8. doi: 10.1016/j.celrep.2016.08.085. PMID:27681416

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] () [Save to disk] CSU: Contacts of Structural Units for 5DFE Structure Factors (17545 Kb) Retrieve 5DFE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DFE from S2C, [Save to disk]

View 5DFE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DFE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dfe_XH] [5dfe_XI] [5dfe_YF] [5dfe_XD] [5dfe_R3] [5dfe_XB] [5dfe_QF] [5dfe_YR] [5dfe_RP] [5dfe_QM] [5dfe_XM] [5dfe_RF] [5dfe_QX] [5dfe_QT] [5dfe_QI] [5dfe_QE] [5dfe_YB] [5dfe_R6] [5dfe_QB] [5dfe_XK] [5dfe_YD] [5dfe_RN] [5dfe_Y5] [5dfe_R9] [5dfe_XT] [5dfe_Y0] [5dfe_XA] [5dfe_QL] [5dfe_XY] [5dfe_QG] [5dfe_QR] [5dfe_QD] [5dfe_Y7] [5dfe_QP] [5dfe_XR] [5dfe_Y1] [5dfe_QQ] [5dfe_QS] [5dfe_XP] [5dfe_QJ] [5dfe_Y3] [5dfe_XN] [5dfe_YU] [5dfe_YI] [5dfe_QA] [5dfe_R4] [5dfe_RQ] [5dfe_XU] [5dfe] [5dfe_YX] [5dfe_XF] [5dfe_RT] [5dfe_RH] [5dfe_YT] [5dfe_YN] [5dfe_RD] [5dfe_RI] [5dfe_XG] [5dfe_RZ] [5dfe_RB] [5dfe_RY] [5dfe_XS] [5dfe_RV] [5dfe_XE] [5dfe_RS] [5dfe_QK] [5dfe_XJ] [5dfe_QH] [5dfe_YO] [5dfe_QC] [5dfe_YS] [5dfe_R2] [5dfe_Y6] [5dfe_Y9] [5dfe_XX] [5dfe_YP] [5dfe_YZ] [5dfe_RX] [5dfe_RA] [5dfe_XO] [5dfe_RW] [5dfe_YG] [5dfe_XC] [5dfe_Y2] [5dfe_YW] [5dfe_YQ] [5dfe_QU] [5dfe_QN] [5dfe_XV] [5dfe_RU] [5dfe_R0] [5dfe_Y4] [5dfe_RR] [5dfe_XL] [5dfe_YE] [5dfe_R8] [5dfe_QY] [5dfe_QO] [5dfe_R1] [5dfe_RE] [5dfe_YH] [5dfe_RO] [5dfe_YV] [5dfe_YY] [5dfe_Y8] [5dfe_YA] [5dfe_R5] [5dfe_XQ] [5dfe_QV] [5dfe_RG] [5dfe_R7] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5DFE: [KH] [KOW] [PCRF] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

Other resources with information on 5DFE

Community annotation for 5DFE at PDBWiki (http://pdbwiki.org)

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