5EAR	Transcription Transcription Inhibitor	date	Oct 16, 2015
title	Crystal Structure Of Human Wdr5 In Complex With Compound 9d
authors	A.Dong, L.Dombrovski, D.Smil, M.Getlik, Y.Bolshan, J.R.Walker, G.Senisterra, G.Poda, R.Al-Awar, M.Schapira, M.Vedadi, C.Bountra A.M.Edwards, C.H.Arrowsmith, P.J.Brown, H.Wu, Structural Genomi Consortium (Sgc)
compound		source
Molecule: Wd Repeat-Containing Protein 5 Chain: A, B Fragment: Unp Residues 23-334 Synonym: Bmp2-Induced 3-Kb Gene Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr5, Big3 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)V2rprare Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
symmetry	Space Group: P 1	R_factor 0.153 R_Free 0.185
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.640 53.615 64.707 107.92 90.95 109.66
method	X-Ray Diffraction	resolution	1.80 Å
ligand	5MQ, EDO, SO4, UNX	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-Based Optimization of a Small Molecule Antagonist of the Interaction Between WD Repeat-Containing Protein 5 (WDR5) and Mixed-Lineage Leukemia 1 (MLL1)., Getlik M, Smil D, Zepeda-Velazquez C, Bolshan Y, Poda G, Wu H, Dong A, Kuznetsova E, Marcellus R, Senisterra G, Dombrovski L, Hajian T, Kiyota T, Schapira M, Arrowsmith CH, Brown PJ, Vedadi M, Al-Awar R, J Med Chem. 2016 Mar 24;59(6):2478-96. doi: 10.1021/acs.jmedchem.5b01630. Epub, 2016 Mar 9. PMID:26958703

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (5ear.pdb1.gz) 53 Kb Biological Unit Coordinates (5ear.pdb2.gz) 55 Kb LPC: Ligand-Protein Contacts for 5EAR CSU: Contacts of Structural Units for 5EAR Structure Factors (899 Kb) Retrieve 5EAR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EAR from S2C, [Save to disk] Re-refined 5ear structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EAR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EAR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ear_A] [5ear] [5ear_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5EAR: [WD40 ] by SMART

Other resources with information on 5EAR

Community annotation for 5EAR at PDBWiki (http://pdbwiki.org)

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