5GJR Hydrolase date 6-0 20, 2000
authors X.L.Huang, B.Luan, J.P.Wu, Y.G.Shi
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
547.840 547.840 547.840 90.00 90.00 90.00
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
0
  • proteasome-activating ATPase...


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  • proteasome complex
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  • proteasome complex
  • Primary referenceAn atomic structure of the human 26S proteasome., Huang X, Luan B, Wu J, Shi Y, Nat Struct Mol Biol. 2016 Jul 18. doi: 10.1038/nsmb.3273. PMID:27428775
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1972 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5GJR
  • Retrieve 5GJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GJR from S2C, [Save to disk]
  • View 5GJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GJR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5gjr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gjr_K] [5gjr_a] [5gjr_E] [5gjr_e] [5gjr_b] [5gjr_l] [5gjr_v] [5gjr_AC] [5gjr_Z] [5gjr_u] [5gjr_f] [5gjr_j] [5gjr_s] [5gjr_m] [5gjr_H] [5gjr_i] [5gjr_F] [5gjr_z] [5gjr_S] [5gjr_p] [5gjr_J] [5gjr_n] [5gjr_y] [5gjr_7] [5gjr_T] [5gjr_k] [5gjr_N] [5gjr_4] [5gjr_h] [5gjr_P] [5gjr_V] [5gjr_L] [5gjr_o] [5gjr_B] [5gjr_Y] [5gjr_3] [5gjr_1] [5gjr_G] [5gjr_M] [5gjr] [5gjr_X] [5gjr_q] [5gjr_AA] [5gjr_C] [5gjr_t] [5gjr_R] [5gjr_D] [5gjr_r] [5gjr_g] [5gjr_c] [5gjr_d] [5gjr_2] [5gjr_AB] [5gjr_x] [5gjr_W] [5gjr_0] [5gjr_Q] [5gjr_5] [5gjr_I] [5gjr_O] [5gjr_U] [5gjr_6] [5gjr_8] [5gjr_9] [5gjr_w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5GJR: [AAA] [DSS1_SEM1] [JAB_MPN] [PAM] [PINT] [Proteasome_A_N] [UIM] [VWA ] by SMART
  • Other resources with information on 5GJR
  • Community annotation for 5GJR at PDBWiki (http://pdbwiki.org)

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