5GM6 Rna Binding Protein Rna date 6-0 20, 1999
authors C.Yan, R.Wan, R.Bai, G.Huang, Y.Shi
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A
  • metallopeptidase activity


    • B


    C


    F


    G


    H


    I


    J


    K


    O


    P

  • U2-type catalytic step 1 spl...
  • U2-type catalytic step 2 spl...
    • Q


    R

  • U2-type catalytic step 1 spl...
  • U2-type catalytic step 2 spl...
    • S


    T


    U


    V


    W


    X


    Y


    Z


    a


    b


    c

  • U2-type catalytic step 1 spl...
    • d, v


    e


    f

  • U2-type catalytic step 1 spl...
  • U2-type catalytic step 2 spl...
    • g


    h


    i


    j


    k


    l


    m


    n


    q, r, p, o

  • U2-type catalytic step 1 spl...
    • t

  • U2-type catalytic step 1 spl...
    • Primary referenceStructure of a yeast activated spliceosome at 3.5 A resolution., Yan C, Wan R, Bai R, Huang G, Shi Y, Science. 2016 Aug 26;353(6302):904-11. doi: 10.1126/science.aag0291. Epub 2016, Jul 21. PMID:27445306
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1949 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5GM6
  • Retrieve 5GM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GM6 from S2C, [Save to disk]
    • View 5GM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GM6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gm6] [5gm6_W] [5gm6_q] [5gm6_L] [5gm6_J] [5gm6_t] [5gm6_I] [5gm6_a] [5gm6_A] [5gm6_X] [5gm6_o] [5gm6_j] [5gm6_v] [5gm6_M] [5gm6_p] [5gm6_e] [5gm6_g] [5gm6_B] [5gm6_N] [5gm6_i] [5gm6_R] [5gm6_m] [5gm6_k] [5gm6_c] [5gm6_G] [5gm6_Z] [5gm6_H] [5gm6_l] [5gm6_K] [5gm6_F] [5gm6_V] [5gm6_P] [5gm6_r] [5gm6_h] [5gm6_d] [5gm6_C] [5gm6_E] [5gm6_b] [5gm6_S] [5gm6_D] [5gm6_U] [5gm6_f] [5gm6_T] [5gm6_n] [5gm6_Y] [5gm6_Q] [5gm6_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5GM6: [AAA] [DEXDc] [EFG_C] [EFG_IV] [FHA] [HA2] [HAT] [HELICc] [JAB_MPN] [MA3] [MIF4G] [PSP] [RING] [RRM] [SANT] [Sec63] [Sm] [Ubox] [WD40] [ZnF_C2H2] [ZnF_C3H1] [ZnF_U1] [cwf21 ] by SMART
    • Other resources with information on 5GM6
  • Community annotation for 5GM6 at PDBWiki (http://pdbwiki.org)

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