OCA Atlas for 5J3C

5J3C

Ribosome

date

6-0 20, 1997

authors

E.D.Hoffer, C.M.Dunham

compound

source

symmetry

Space Group: P 21 21 21

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
209.510	450.890	622.070	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

Gene

ECE24377A

Gene
Ontology

Chain	Function	Process	Component
QH, XH
QO, XO
QP, XP
QQ, XQ
QR, XR
QT, XT
R0, Y0
R1, Y1
R2, Y2
R3, Y3
R4, Y4
R5, Y5
R8, Y8
R9, Y9
RE, YE
RF, YF
RN, YN
RP, YP
RQ, YQ
RS, YS
RW, YW
RX, YX
XB, QB
XC, QC
XD, QD
XE, QE
XF, QF
XG, QG
XI, QI
XJ, QJ
XK, QK
XL, QL
XM, QM
XN, QN
XS, QS
XU, QU
XY, QY
Y6, R6
Y7, R7
YD, RD
YG, RG
YH, RH
YI, RI
YO, RO
YR, RR
YT, RT
YU, RU
YV, RV
YY, RY
YZ, RZ

Primary reference

Uniformity of Peptide Release Is Maintained by Methylation of Release Factors., Pierson WE, Hoffer ED, Keedy HE, Simms CL, Dunham CM, Zaher HS, Cell Rep. 2016 Sep 27;17(1):11-8. doi: 10.1016/j.celrep.2016.08.085. PMID:27681416

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3764 Kb) [Save to disk]

CSU: Contacts of Structural Units for 5J3C

Structure Factors (18413 Kb)

Retrieve 5J3C in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5J3C from S2C, [Save to disk]

View 5J3C in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5J3C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j3c_QV] [5j3c_QB] [5j3c_XR] [5j3c_XF] [5j3c_RW] [5j3c_XB] [5j3c_RX] [5j3c_R1] [5j3c_QO] [5j3c_YQ] [5j3c_Y4] [5j3c_YA] [5j3c_YR] [5j3c_RP] [5j3c_YP] [5j3c_R4] [5j3c_QG] [5j3c_RA] [5j3c_QX] [5j3c_R3] [5j3c_RB] [5j3c_QH] [5j3c_YX] [5j3c_QL] [5j3c_Y0] [5j3c_XH] [5j3c_XP] [5j3c_Y3] [5j3c_YW] [5j3c_XV] [5j3c_XK] [5j3c_QT] [5j3c_XJ] [5j3c_XM] [5j3c_RQ] [5j3c] [5j3c_XD] [5j3c_XQ] [5j3c_RR] [5j3c_QY] [5j3c_R6] [5j3c_RG] [5j3c_XC] [5j3c_R7] [5j3c_RI] [5j3c_YV] [5j3c_RO] [5j3c_YB] [5j3c_XS] [5j3c_XL] [5j3c_R2] [5j3c_Y8] [5j3c_YU] [5j3c_QC] [5j3c_QS] [5j3c_YI] [5j3c_RU] [5j3c_QN] [5j3c_YD] [5j3c_R9] [5j3c_XE] [5j3c_YZ] [5j3c_QM] [5j3c_RT] [5j3c_XG] [5j3c_R8] [5j3c_QD] [5j3c_RE] [5j3c_RF] [5j3c_QP] [5j3c_QK] [5j3c_R5] [5j3c_YN] [5j3c_QE] [5j3c_XT] [5j3c_Y1] [5j3c_QI] [5j3c_Y6] [5j3c_RV] [5j3c_YT] [5j3c_YE] [5j3c_QU] [5j3c_QJ] [5j3c_RN] [5j3c_QQ] [5j3c_RH] [5j3c_RZ] [5j3c_R0] [5j3c_RD] [5j3c_XN] [5j3c_Y2] [5j3c_Y5] [5j3c_Y7] [5j3c_YG] [5j3c_XY] [5j3c_YF] [5j3c_YY] [5j3c_XX] [5j3c_YO] [5j3c_QF] [5j3c_XO] [5j3c_YS] [5j3c_XI] [5j3c_XA] [5j3c_QR] [5j3c_YH] [5j3c_Y9] [5j3c_QA] [5j3c_RS] [5j3c_XU] [5j3c_RY]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 5J3C: [KH] [KOW] [PCRF] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

Other resources with information on 5J3C

Community annotation for 5J3C at PDBWiki (http://pdbwiki.org)

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