5JUP Ribosome date 6-0 20, 1999
authors P.Abeyrathne, C.S.Koh, T.Grant, N.Grigorieff, A.A.Korostelev
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
AA

  • cytosolic large ribosomal su...
    • AB

  • cytosolic small ribosomal su...
    • AC

  • cytosolic small ribosomal su...
    • BA

  • cytosolic large ribosomal su...
    • BB

  • cytosolic small ribosomal su...
    • BC


    CA

  • cytosolic large ribosomal su...
    • CB

  • cytosolic small ribosomal su...
    • CC

  • cytosolic small ribosomal su...
    • DA


    DB

  • cytosolic small ribosomal su...
    • DC


    E

  • cytosolic large ribosomal su...
    • EA

  • cytosolic large ribosomal su...
    • EB


    F


    FA

  • cytosolic large ribosomal su...
    • FB

  • cytosolic small ribosomal su...
    • G

  • cytosolic large ribosomal su...
    • GA


    GB

  • cytosolic small ribosomal su...
    • H

  • cytosolic large ribosomal su...
    • HA

  • cytosolic large ribosomal su...
    • HB


    I

  • cytosolic large ribosomal su...
    • IA


    IB

  • cytosolic small ribosomal su...
    • J


    JA

  • cytosolic large ribosomal su...
    • JB

  • cytosolic small ribosomal su...
    • K


    KA


    KB

  • cytosolic small ribosomal su...
    • L

  • cytosolic large ribosomal su...
    • LA

  • preribosome, large subunit p...
    • LB


    M


    MA

  • cytosolic large ribosomal su...
    • MB


    N

  • cytosolic large ribosomal su...
    • NA


    NB


    O

  • cytosolic large ribosomal su...
    • OA

  • cytosolic large ribosomal su...
    • OB


    P

  • cytosolic large ribosomal su...
    • PA

  • cytosolic large ribosomal su...
    • PB


    Q

  • cytosolic large ribosomal su...
    • QA

  • cytosolic large ribosomal su...
    • QB

  • cytosolic small ribosomal su...
    • R

  • cytosolic large ribosomal su...
    • RA

  • cytosolic large ribosomal su...
    • RB

  • cytosolic small ribosomal su...
    • S


    SA


    SB

  • cytosolic small ribosomal su...
    • T

  • cytosolic large ribosomal su...
    • TA

  • cytosolic large ribosomal su...
    • TB

  • cytosolic small ribosomal su...
    • U


    UA

  • cytosolic large ribosomal su...
    • UB


    V

  • cytosolic large ribosomal su...
    • VA


    VB


    W

  • cytosolic large ribosomal su...
    • WA
  • GDP-dissociation inhibitor a...


    • WB

  • cytosolic small ribosomal su...
    • X

  • cytosolic large ribosomal su...
    • XA


    XB


    Y

  • cytosolic large ribosomal su...
    • YA


    YB

  • cytosolic small ribosomal su...
    • Z


    ZA


    ZB

  • cytosolic small ribosomal su...
    • Primary referenceEnsemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome., Abeyrathne PD, Koh CS, Grant T, Grigorieff N, Korostelev AA, Elife. 2016 May 9;5. pii: e14874. doi: 10.7554/eLife.14874. PMID:27159452
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (711 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5JUP
  • Retrieve 5JUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JUP from S2C, [Save to disk]
    • View 5JUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JUP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jup_BC] [5jup_EB] [5jup_S] [5jup_Q] [5jup_RA] [5jup_R] [5jup_KA] [5jup_J] [5jup_DA] [5jup_XB] [5jup_VA] [5jup_O] [5jup_CC] [5jup_BB] [5jup_P] [5jup_T] [5jup_MB] [5jup_LA] [5jup_AA] [5jup_NA] [5jup_EC] [5jup_ZB] [5jup_JA] [5jup_ZA] [5jup_K] [5jup_I] [5jup_L] [5jup_HB] [5jup_V] [5jup_GA] [5jup_WA] [5jup_U] [5jup_A] [5jup_CA] [5jup_C] [5jup_SA] [5jup_UA] [5jup_XA] [5jup_D] [5jup_OA] [5jup_PB] [5jup_FA] [5jup] [5jup_YA] [5jup_OB] [5jup_N] [5jup_QA] [5jup_AC] [5jup_HA] [5jup_VB] [5jup_W] [5jup_B] [5jup_BA] [5jup_AB] [5jup_TB] [5jup_IB] [5jup_PA] [5jup_Z] [5jup_QB] [5jup_EA] [5jup_H] [5jup_MA] [5jup_DB] [5jup_YB] [5jup_Y] [5jup_G] [5jup_NB] [5jup_X] [5jup_WB] [5jup_TA] [5jup_RB] [5jup_GB] [5jup_UB] [5jup_SB] [5jup_CB] [5jup_M] [5jup_KB] [5jup_FB] [5jup_LB] [5jup_JB] [5jup_E] [5jup_DC] [5jup_F] [5jup_IA]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5JUP: [EFG_C] [EFG_IV] [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [UBQ] [WD40 ] by SMART
    • Other resources with information on 5JUP
  • Community annotation for 5JUP at PDBWiki (http://pdbwiki.org)

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