5JY3	Transcription	date	May 13, 2016
title	Crystal Structure Of Lxrbeta (Nuclear Receptor Subfamily 1, Member 2) Complexed With Bms-852927
authors	J.K.Muckelbauer
compound		source
Molecule: Oxysterols Receptor Lxr-Beta Chain: A, B, C, D Fragment: Unp Residues 213-460 Synonym: Liver X Receptor Beta,Nuclear Receptor Ner,Nuclear Subfamily 1 Group H Member 2,Ubiquitously-Expressed Nuclear Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1h2, Lxrb, Ner, Unr Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.225 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 183.660 120.350 55.720 90.00 107.49 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	6OX, BU1	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Discovery of Highly Potent Liver X Receptor beta Agonists., Kick EK, Busch BB, Martin R, Stevens WC, Bollu V, Xie Y, Boren BC, Nyman MC, Nanao MH, Nguyen L, Plonowski A, Schulman IG, Yan G, Zhang H, Hou X, Valente MN, Narayanan R, Behnia K, Rodrigues AD, Brock B, Smalley J, Cantor GH, Lupisella J, Sleph P, Grimm D, Ostrowski J, Wexler RR, Kirchgessner T, Mohan R, ACS Med Chem Lett. 2016 Oct 23;7(12):1207-1212. eCollection 2016 Dec 8. PMID:27994765

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk] Biological Unit Coordinates (5jy3.pdb1.gz) 79 Kb Biological Unit Coordinates (5jy3.pdb2.gz) 79 Kb LPC: Ligand-Protein Contacts for 5JY3 CSU: Contacts of Structural Units for 5JY3 Structure Factors (941 Kb) Retrieve 5JY3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JY3 from S2C, [Save to disk] Re-refined 5jy3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JY3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JY3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jy3_D] [5jy3_A] [5jy3] [5jy3_B] [5jy3_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5JY3: [HOLI ] by SMART

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