OCA Atlas for 5JY3

5JY3

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

6OX, BU1

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B

Primary reference

Discovery of Highly Potent Liver X Receptor beta Agonists., Kick EK, Busch BB, Martin R, Stevens WC, Bollu V, Xie Y, Boren BC, Nyman MC, Nanao MH, Nguyen L, Plonowski A, Schulman IG, Yan G, Zhang H, Hou X, Valente MN, Narayanan R, Behnia K, Rodrigues AD, Brock B, Smalley J, Cantor GH, Lupisella J, Sleph P, Grimm D, Ostrowski J, Wexler RR, Kirchgessner T, Mohan R, ACS Med Chem Lett. 2016 Oct 23;7(12):1207-1212. eCollection 2016 Dec 8. PMID:27994765

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]

Biological Unit Coordinates (5jy3.pdb1.gz) 79 Kb

Biological Unit Coordinates (5jy3.pdb2.gz) 79 Kb

LPC: Ligand-Protein Contacts for 5JY3

CSU: Contacts of Structural Units for 5JY3

Structure Factors (941 Kb)

Retrieve 5JY3 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5JY3 from S2C, [Save to disk]

Re-refined 5jy3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JY3 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jy3] [5jy3_A] [5jy3_B] [5jy3_C] [5jy3_D]

SWISS-PROT database:

Domain found in 5JY3: [HOLI ] by SMART

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