5L4G Hydrolase date 6-0 20, 1998
authors A.Schweitzer, A.Aufderheide, T.Rudack, F.Beck
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
1, U


2, V


7, 8


B, O


C, P


D, Q


E, R


H
  • proteasome-activating ATPase...


  • I
  • proteasome-activating ATPase...


  • J
  • proteasome-activating ATPase...


  • K
  • proteasome-activating ATPase...


  • L
  • proteasome-activating ATPase...

  • proteasome complex
  • M
  • proteasome-activating ATPase...


  • N, A
  • positive regulation of NF-ka...

  • S, F


    T, G


    W, 3


    X, 4


    Y, 5


    Z, 6


    Primary referenceStructure of the human 26S proteasome at a resolution of 3.9 A., Schweitzer A, Aufderheide A, Rudack T, Beck F, Pfeifer G, Plitzko JM, Sakata E, Schulten K, Forster F, Baumeister W, Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7816-21. doi:, 10.1073/pnas.1608050113. Epub 2016 Jun 24. PMID:27342858
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1913 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5L4G
  • Retrieve 5L4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L4G from S2C, [Save to disk]
  • View 5L4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L4G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5l4g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l4g_8] [5l4g_Y] [5l4g_G] [5l4g_4] [5l4g_1] [5l4g_Q] [5l4g_P] [5l4g_6] [5l4g_B] [5l4g_I] [5l4g_K] [5l4g_O] [5l4g_T] [5l4g_U] [5l4g_2] [5l4g_A] [5l4g_V] [5l4g_W] [5l4g_F] [5l4g_D] [5l4g_3] [5l4g_X] [5l4g_7] [5l4g] [5l4g_M] [5l4g_R] [5l4g_H] [5l4g_L] [5l4g_N] [5l4g_Z] [5l4g_5] [5l4g_E] [5l4g_J] [5l4g_C] [5l4g_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5L4G: [AAA] [Proteasome_A_N ] by SMART
  • Other resources with information on 5L4G
  • Community annotation for 5L4G at PDBWiki (http://pdbwiki.org)

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