5LKS Ribosome date 6-0 20, 1998
authors A.G.Myasnikov, S.K.Natchiar, M.Nebout, I.Hazemann, V.Imbert, H.Khatter, J.F.Peyron, B.P.Klaholz
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
LA


LB


LC


LD


LE


LF


LG


LH


LI


LJ


LL


LM


LN


LO


LP


LQ


LR


LS


LT


LU


LV


LW


LX


LY


LZ


La


Lb


Lc


Ld


Le


Lf


Lg


Lh


Li


Lj


Lk


Ll


Lm
  • intracellular transport of v...

  • Ln


    Lo

  • cytosolic large ribosomal su...
  • Lp


    Lr


    Lz


    SA
  • virus receptor activity

  • cytosolic small ribosomal su...
  • SB

  • cytosolic small ribosomal su...
  • SC

  • cytosolic small ribosomal su...
  • SD

  • cytosolic small ribosomal su...
  • SE

  • ribosome
  • cytosolic small ribosomal su...
  • SF

  • cytosolic small ribosomal su...
  • SG

  • cytosolic small ribosomal su...
  • SH

  • cytosolic small ribosomal su...
  • SI

  • cytosolic small ribosomal su...
  • SJ

  • cytosolic small ribosomal su...
  • SK

  • cytosolic small ribosomal su...
  • SL

  • cytosolic small ribosomal su...
  • SM

  • cytosolic small ribosomal su...
  • SN

  • cytosolic small ribosomal su...
  • SO
  • translation regulator activi...

  • cytosolic small ribosomal su...
  • SP

  • cytosolic small ribosomal su...
  • SQ

  • cytosolic small ribosomal su...
  • SR

  • cytosolic small ribosomal su...
  • SS

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • ST

  • cytosolic small ribosomal su...
  • SU

  • cytosolic small ribosomal su...
  • SV

  • cytosolic small ribosomal su...
  • SW

  • cytosolic small ribosomal su...
  • SX

  • cytosolic small ribosomal su...
  • SY

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • SZ

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Sa

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Sb

  • cytosolic small ribosomal su...
  • Sc

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Sd

  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Se


    Sf
  • intracellular transport of v...
  • small ribosomal subunit
  • cytosolic small ribosomal su...
  • Sg
  • protein tyrosine kinase inhi...


  • Primary referenceStructure-function insights reveal the human ribosome as a cancer target for antibiotics., Myasnikov AG, Kundhavai Natchiar S, Nebout M, Hazemann I, Imbert V, Khatter H, Peyron JF, Klaholz BP, Nat Commun. 2016 Sep 26;7:12856. doi: 10.1038/ncomms12856. PMID:27665925
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1925 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5LKS
  • Retrieve 5LKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LKS from S2C, [Save to disk]
  • View 5LKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LKS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lks from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lks_SN] [5lks_LR] [5lks_Sa] [5lks_SP] [5lks_LV] [5lks_LU] [5lks_LS] [5lks_LY] [5lks_LQ] [5lks_SH] [5lks_Sb] [5lks_L8] [5lks_Lh] [5lks_LA] [5lks_Lj] [5lks_LC] [5lks_SD] [5lks_LF] [5lks_LE] [5lks_Sf] [5lks_Lm] [5lks_SS] [5lks_SU] [5lks_Lz] [5lks_LN] [5lks_LZ] [5lks_L7] [5lks_SJ] [5lks_Lo] [5lks_SI] [5lks_LJ] [5lks_LG] [5lks_LL] [5lks_Ll] [5lks_LM] [5lks_SF] [5lks_SM] [5lks_LW] [5lks_LO] [5lks_Lp] [5lks_Sg] [5lks_Sc] [5lks_Sd] [5lks_SQ] [5lks_Li] [5lks_Lr] [5lks_Se] [5lks_Lc] [5lks_Le] [5lks_LD] [5lks_SC] [5lks_ST] [5lks_SY] [5lks_SL] [5lks_Lg] [5lks_LT] [5lks_S2] [5lks_SX] [5lks_Lk] [5lks_LI] [5lks_SO] [5lks_La] [5lks_SW] [5lks_Ld] [5lks_Lf] [5lks_L5] [5lks_SB] [5lks_Lb] [5lks_SA] [5lks] [5lks_LX] [5lks_SE] [5lks_LH] [5lks_Ln] [5lks_SG] [5lks_LB] [5lks_LP] [5lks_SR] [5lks_SV] [5lks_SK] [5lks_SZ]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LKS
  • Community annotation for 5LKS at PDBWiki (http://pdbwiki.org)

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