5LTY	Transcription	date	Sep 07, 2016
title	Homeobox Transcription Factor Cdx2 Bound To Methylated Dna
authors	E.Morgunova, A.Popov, J.Taipale
compound		source
Molecule: Dna (5'-D(Ptptpgptpgptptptptpap(5cm) Pgpapcpcptpcpc)-3'); Chain: A, B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Homeobox Protein Cdx-2 Chain: K, M Synonym: Cdx-3,Caudal-Type Homeobox Protein 2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdx2, Cdx3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Petg20a
Molecule: Dna (5'-D(Pgpgpapgpgptp(5cm) Pgptpapapapapcpapcpapa)-3'); Chain: F, E Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 1 2 1	R_factor 0.202 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.882 46.613 120.428 90.00 98.46 90.00
method	X-Ray Diffraction	resolution	2.66 Å
ligand	5CM	enzyme
Gene Ontology	Chain Function Process Component M, K

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk] Biological Unit Coordinates (5lty.pdb1.gz) 57 Kb Biological Unit Coordinates (5lty.pdb2.gz) 57 Kb LPC: Ligand-Protein Contacts for 5LTY CSU: Contacts of Structural Units for 5LTY Structure Factors (698 Kb) Retrieve 5LTY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LTY from S2C, [Save to disk] Re-refined 5lty structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LTY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LTY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lty_F] [5lty_K] [5lty_B] [5lty_E] [5lty_M] [5lty_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5LTY at PDBWiki (http://pdbwiki.org)

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