5LZT Ribosome date 6-1 20, 2000
authors S.Shao, J.Murray, A.Brown, J.Taunton, V.Ramakrishnan, R.S.He
compound source
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
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Primary referenceDecoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes., Shao S, Murray J, Brown A, Taunton J, Ramakrishnan V, Hegde RS, Cell. 2016 Nov 17;167(5):1229-1240.e15. doi: 10.1016/j.cell.2016.10.046. PMID:27863242
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1175 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5LZT
  • Retrieve 5LZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LZT from S2C, [Save to disk]
  • View 5LZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LZT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lzt_L] [5lzt_8] [5lzt_EE] [5lzt_ZZ] [5lzt_OO] [5lzt_D] [5lzt] [5lzt_I] [5lzt_HH] [5lzt_aa] [5lzt_ii] [5lzt_O] [5lzt_t] [5lzt_DD] [5lzt_QQ] [5lzt_RR] [5lzt_j] [5lzt_l] [5lzt_GG] [5lzt_r] [5lzt_X] [5lzt_JJ] [5lzt_YY] [5lzt_2] [5lzt_C] [5lzt_g] [5lzt_gg] [5lzt_1] [5lzt_V] [5lzt_R] [5lzt_Q] [5lzt_k] [5lzt_M] [5lzt_PP] [5lzt_W] [5lzt_CC] [5lzt_e] [5lzt_n] [5lzt_AA] [5lzt_cc] [5lzt_E] [5lzt_T] [5lzt_II] [5lzt_jj] [5lzt_N] [5lzt_m] [5lzt_G] [5lzt_a] [5lzt_p] [5lzt_WW] [5lzt_VV] [5lzt_d] [5lzt_s] [5lzt_i] [5lzt_ee] [5lzt_h] [5lzt_c] [5lzt_MM] [5lzt_5] [5lzt_XX] [5lzt_LL] [5lzt_BB] [5lzt_KK] [5lzt_P] [5lzt_f] [5lzt_F] [5lzt_TT] [5lzt_b] [5lzt_UU] [5lzt_7] [5lzt_dd] [5lzt_S] [5lzt_J] [5lzt_Z] [5lzt_H] [5lzt_bb] [5lzt_ff] [5lzt_U] [5lzt_Y] [5lzt_hh] [5lzt_o] [5lzt_NN] [5lzt_9] [5lzt_FF] [5lzt_SS] [5lzt_3] [5lzt_B] [5lzt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5LZT: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [TRASH] [UBQ] [WD40] [eRF1_1 ] by SMART
  • Other resources with information on 5LZT
  • Community annotation for 5LZT at PDBWiki (http://pdbwiki.org)

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