5T0C Hydrolase date 6-0 20, 1999
authors S.Chen, J.Wu, Y.Lu, Y.B.Ma, B.H.Lee, Z.Yu, Q.Ouyang, D.Finle M.W.Kirschner, Y.Mao
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
AA, BA
  • proteasome-activating ATPase...


  • AC, BC


    AD, BD
  • proteasome-activating ATPase...


  • AG, BG
  • positive regulation of NF-ka...

  • AH, BH


    AJ, BJ


    AK, BK


    AM, BM


    AO, BO


    AR, BR


    AT, BT


    AU, BU
  • enzyme regulator activity


  • AV, BV
  • enzyme regulator activity


  • AY, BY
  • enzyme regulator activity


  • AZ, BZ


    Ab, Bb


    Ac, Bc
  • endopeptidase activator acti...


  • Ae, Be


    BB, AB
  • proteasome-activating ATPase...


  • BE, AE

  • proteasome complex
  • BF, AF


    BI, AI


    BL, AL


    BN, AN


    BP, AP


    BQ, AQ


    BS, AS


    BW, AW


    BX, AX


    Ba, Aa


    Bd, Ad


    Bf, Af
  • enzyme regulator activity


  • Primary referenceStructural basis for dynamic regulation of the human 26S proteasome., Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley DJ, Kirschner MW, Mao Y, Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):12991-12996. Epub 2016 Oct 21. PMID:27791164
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4103 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5T0C
  • Retrieve 5T0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T0C from S2C, [Save to disk]
  • View 5T0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T0C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5t0c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t0c_BF] [5t0c_BI] [5t0c_AI] [5t0c_BP] [5t0c_BT] [5t0c_BD] [5t0c_AC] [5t0c_BK] [5t0c_Bb] [5t0c_Ba] [5t0c_AO] [5t0c_Ae] [5t0c_BC] [5t0c_AK] [5t0c_Aa] [5t0c_BM] [5t0c_AB] [5t0c_BA] [5t0c_BQ] [5t0c_Bf] [5t0c_AV] [5t0c_AF] [5t0c_AN] [5t0c_BN] [5t0c_AT] [5t0c_BH] [5t0c_AU] [5t0c_BJ] [5t0c_BO] [5t0c_AS] [5t0c_BS] [5t0c_AJ] [5t0c_Ad] [5t0c_AY] [5t0c_AZ] [5t0c_BB] [5t0c_AL] [5t0c_BG] [5t0c_BV] [5t0c_Bd] [5t0c_AA] [5t0c_Af] [5t0c_BX] [5t0c_AG] [5t0c_AE] [5t0c_Bc] [5t0c_AH] [5t0c_AR] [5t0c_AW] [5t0c_BR] [5t0c_BZ] [5t0c_BW] [5t0c_Be] [5t0c_AX] [5t0c_BL] [5t0c_BE] [5t0c_BU] [5t0c_BY] [5t0c_Ac] [5t0c_AP] [5t0c_Ab] [5t0c_AD] [5t0c_AM] [5t0c] [5t0c_AQ]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5T0C: [AAA] [DSS1_SEM1] [JAB_MPN] [PAM] [PINT] [Proteasome_A_N] [UIM] [VWA ] by SMART
  • Other resources with information on 5T0C
  • Community annotation for 5T0C at PDBWiki (http://pdbwiki.org)

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