5TBW Ribosome date 6-0 20, 1999
authors Z.A.Konst, A.R.Szklarski, S.Pellegrino, S.E.Michalak, M.Meye C.Zanette, R.Cencic, S.Nam, D.A.Horne, J.Pelletier, D.L.Mob G.Yusupova, M.Yusupov, C.D.Vanderwal
compound source
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
304.800 288.200 437.680 90.00 98.71 90.00
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
0CU

  • cytosolic large ribosomal su...
  • 2, CV

  • cytosolic large ribosomal su...
  • 8, CZ


    AA, DB

  • cytosolic large ribosomal su...
  • AC, DD


    AD, DE

  • cytosolic large ribosomal su...
  • AE, DF


    AJ, DK


    AK, DL

  • cytosolic large ribosomal su...
  • AM, DN

  • cytosolic large ribosomal su...
  • AO, DP


    AQ, DR

  • cytosolic large ribosomal su...
  • B, s0


    CD, j


    CF, l

  • cytosolic large ribosomal su...
  • CH, n


    CI, o


    CJ, p

  • cytosolic large ribosomal su...
  • CK, q


    CL, r

  • cytosolic large ribosomal su...
  • CM, s

  • cytosolic large ribosomal su...
  • CP, v


    CQ, w

  • cytosolic large ribosomal su...
  • CR, x


    CT, z

  • cytosolic large ribosomal su...
  • CW, 5


    CX, 6

  • cytosolic large ribosomal su...
  • D, s2


    DA, 9


    DC, AB

  • cytosolic large ribosomal su...
  • DG, AF

  • cytosolic large ribosomal su...
  • DH, AG


    DI, AH

  • preribosome, large subunit p...
  • DJ, AI

  • cytosolic large ribosomal su...
  • DM, AL

  • cytosolic large ribosomal su...
  • DO, AN


    DQ, AP

  • cytosolic large ribosomal su...
  • E, s3

  • cytosolic small ribosomal su...
  • K, s9

  • cytosolic small ribosomal su...
  • M, c1

  • cytosolic small ribosomal su...
  • N, c2

  • cytosolic small ribosomal su...
  • Q, c5


    Rb, h
  • GDP-dissociation inhibitor a...


  • S


    U, c9

  • cytosolic small ribosomal su...
  • X, d2

  • cytosolic small ribosomal su...
  • Y, d3


    c, d7

  • cytosolic small ribosomal su...
  • c0, L


    c3, O

  • cytosolic small ribosomal su...
  • c4, P


    c6, R


    c7


    c8, T


    d, d8

  • cytosolic small ribosomal su...
  • d0, V

  • cytosolic small ribosomal su...
  • d1, W

  • cytosolic small ribosomal su...
  • d4, Z


    d6, b


    e, d9

  • cytosolic small ribosomal su...
  • e0, f


    g, e1


    k, CE

  • cytosolic large ribosomal su...
  • m, CG

  • cytosolic large ribosomal su...
  • p0


    s1, C


    s4, F

  • cytosolic small ribosomal su...
  • s5, G

  • cytosolic small ribosomal su...
  • s6, H

  • cytosolic small ribosomal su...
  • s7, I


    s8, J

  • cytosolic small ribosomal su...
  • t, CN

  • cytosolic large ribosomal su...
  • u, CO

  • cytosolic large ribosomal su...
  • y, CS

  • cytosolic large ribosomal su...
  • Primary referenceSynthesis facilitates an understanding of the structural basis for translation inhibition by the lissoclimides., Konst ZA, Szklarski AR, Pellegrino S, Michalak SE, Meyer M, Zanette C, Cencic R, Nam S, Voora VK, Horne DA, Pelletier J, Mobley DL, Yusupova G, Yusupov M, Vanderwal CD, Nat Chem. 2017 Nov;9(11):1140-1149. doi: 10.1038/nchem.2800. Epub 2017 Jul 3. PMID:29064494
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4005 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 5TBW
  • Structure Factors (12578 Kb)
  • Retrieve 5TBW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TBW from S2C, [Save to disk]
  • View 5TBW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TBW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tbw_CO] [5tbw_AF] [5tbw_sM] [5tbw_c8] [5tbw_7] [5tbw_H] [5tbw_DG] [5tbw_j] [5tbw_AI] [5tbw_V] [5tbw_Y] [5tbw_w] [5tbw_CS] [5tbw_z] [5tbw_CX] [5tbw_c9] [5tbw_CR] [5tbw_0] [5tbw_6] [5tbw_s1] [5tbw_I] [5tbw_c4] [5tbw_DB] [5tbw_F] [5tbw_AT] [5tbw_AA] [5tbw_CP] [5tbw_c2] [5tbw_CZ] [5tbw_DH] [5tbw_p] [5tbw_DE] [5tbw_DR] [5tbw_CV] [5tbw_AO] [5tbw_CK] [5tbw_s] [5tbw_s0] [5tbw_Q] [5tbw_l] [5tbw_4] [5tbw_DM] [5tbw_CG] [5tbw_DQ] [5tbw_r] [5tbw_e0] [5tbw_d9] [5tbw_c3] [5tbw_DP] [5tbw_AN] [5tbw_d7] [5tbw_d6] [5tbw_DF] [5tbw_R] [5tbw_m] [5tbw_q] [5tbw_1] [5tbw_s3] [5tbw_AC] [5tbw_c] [5tbw_CY] [5tbw_T] [5tbw_X] [5tbw_A] [5tbw_W] [5tbw_AH] [5tbw_CF] [5tbw_S] [5tbw_9] [5tbw_D] [5tbw_x] [5tbw_i] [5tbw_CD] [5tbw_CH] [5tbw_h] [5tbw_s8] [5tbw_2] [5tbw_k] [5tbw_AK] [5tbw_DD] [5tbw_d0] [5tbw_s5] [5tbw_d4] [5tbw_d8] [5tbw_b] [5tbw_g] [5tbw_AJ] [5tbw_CU] [5tbw_DO] [5tbw_o] [5tbw_p0] [5tbw_s9] [5tbw_C] [5tbw_J] [5tbw_Z] [5tbw_AE] [5tbw_c5] [5tbw_d2] [5tbw_CE] [5tbw_f] [5tbw_DL] [5tbw_s7] [5tbw_sR] [5tbw_e1] [5tbw_t] [5tbw_c7] [5tbw_O] [5tbw_s6] [5tbw_L] [5tbw_d3] [5tbw_e] [5tbw_AM] [5tbw_G] [5tbw_AD] [5tbw_n] [5tbw_AB] [5tbw_a] [5tbw_AS] [5tbw_AG] [5tbw_s2] [5tbw_d5] [5tbw_CI] [5tbw_CW] [5tbw_AL] [5tbw_c1] [5tbw_d] [5tbw_CQ] [5tbw_B] [5tbw_AR] [5tbw_v] [5tbw_d1] [5tbw_DK] [5tbw_DJ] [5tbw_CM] [5tbw_c0] [5tbw_8] [5tbw_E] [5tbw_DI] [5tbw_AP] [5tbw_y] [5tbw_U] [5tbw_P] [5tbw_N] [5tbw_3] [5tbw_u] [5tbw_c6] [5tbw_DC] [5tbw_CN] [5tbw_DA] [5tbw_K] [5tbw_5] [5tbw_CL] [5tbw_AQ] [5tbw_DN] [5tbw_CJ] [5tbw_s4] [5tbw_Rb] [5tbw_M] [5tbw_CT]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TBW
  • Community annotation for 5TBW at PDBWiki (http://pdbwiki.org)

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